Commits · 11-test-fix-tests-to-handle-licensed-data-resources-from-trud-snd-omop · meldb / concepts-processing · GitLab

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Feb 27, 2025
- Merge branch '23-refactor-pure-example-coding-directory-to-only-required-by-examples' into 'dev' · e08cfa07
  mjbonifa authored 2 months ago
  e08cfa07
- fix: removed clinical codes from clinical-codes-org not required by examples · 60bcb180
  mjbonifa authored 2 months ago
  
  60bcb180
- Merge branch '42-refactor-move-omop-export-into-concept-sets-for' into 'dev' · 5bba5a98
  mjbonifa authored 2 months ago
  5bba5a98
- fix: moved omop export to concept-sets, moved concept set csv files to... · 7fdebb00
  mjbonifa authored 2 months ago
  7fdebb00
- Merge branch '44-fix-add-mag-to-publish' into 'dev' · 195cb71d
  mjbonifa authored 2 months ago
  195cb71d
- fix: added version message to publish. Closes #44 · 5820c9e9
  mjbonifa authored 2 months ago
  
  5820c9e9
- fix: added version message to publish · e6ab6fbc
  mjbonifa authored 2 months ago
  
  e6ab6fbc
Feb 26, 2025
- Merge branch '41-fix-yaml-files-copied-from-a-repo-do-not-have-strings-with-quotes' into 'dev' · 196f1306
  mjbonifa authored 2 months ago
  196f1306
- fix: yaml library dump strips all quotes from the output and there's no... · 4b77e5d3
  mjbonifa authored 2 months ago
  4b77e5d3
- Merge branch... · 57d9539d
  mjbonifa authored 2 months ago
  57d9539d
- feature: added -r option to connect to a remote repo on publication. This is a... · 820b8677
  mjbonifa authored 2 months ago
  820b8677
- Merge branch '40-feature-consistency-between-config-and-translation-files' into 'dev' · 597fd97b
  mjbonifa authored 2 months ago
  597fd97b
- fix: added map definition to the config.yaml so that we know which maps are... · e549bf4b
  mjbonifa authored 2 months ago
  e549bf4b
- Merge branch... · 3ac3a386
  mjbonifa authored 2 months ago
  3ac3a386
- fix: added omop cdm version to the omop version file at 5.4. It's not clear... · 93226637
  mjbonifa authored 2 months ago
  93226637
- Merge branch '33-fix-bug-creating-phen-in-d-tmp' into 'dev' · c348132c
  mjbonifa authored 2 months ago
  c348132c
- fix: had to resolve the phen_path to full path rather than using the relative... · 28fde5f6
  mjbonifa authored 2 months ago
  28fde5f6
- Merge branch... · c4a105e1
  mjbonifa authored 2 months ago
  c4a105e1
- test: added tests for diff between config 1, 2, 3 in test_diff. Updated the... · ba8a7ccb
  mjbonifa authored 2 months ago
  ba8a7ccb
Feb 25, 2025
- Merge branch '39-fix-phen-repo-gitignore-does-not-include-db-files' into 'dev' · 8479e963
  mjbonifa authored 2 months ago
  8479e963
- fix: error writing .gitignore with spaces before *.db and other lines. Closes #39 · 7221405d
  mjbonifa authored 2 months ago
  
  7221405d
- fix: added not license requried against all omop vocabularies after check. #38 · 01b7bc43
  mjbonifa authored 2 months ago
  
  01b7bc43
- fix. removed contributing.md from mkdocs · 900c4949
  mjbonifa authored 2 months ago
  
  900c4949
- Merge branch '38-fix-double-return-in-phen' into 'dev' · fd071371
  mjbonifa authored 2 months ago
  fd071371
- fix: double return in omop. Closes #38 · fa4af7fa
  mjbonifa authored 2 months ago
  
  fa4af7fa
- docs: updated contributing.md · 5bac1766
  mjbonifa authored 2 months ago
  
  5bac1766
- docs: moved contributing.md to root of repo · a98788bc
  mjbonifa authored 2 months ago
  
  a98788bc
- Merge branch '16-fix-validate-all-expected-attributes-in-yaml-config-file' into 'dev' · a26c8fe1
  mjbonifa authored 2 months ago
  a26c8fe1
- fix: added schema validation using Cerberus to the validation in phen. Closes #16 · 8bda4c7c
  mjbonifa authored 2 months ago
  
  8bda4c7c
- docs: added directory docs and yaml config doc file. closes #9 · 0b243914
  mjbonifa authored 2 months ago
  
  0b243914
- docs: added directory docs and yaml config doc file #9 · ae917c8d
  mjbonifa authored 2 months ago
  
  ae917c8d
- docs: added directory docs and yaml config doc file · 31a8ef93
  mjbonifa authored 2 months ago
  
  31a8ef93
- docs: added release commands to contributing.md · 33c28bbf
  mjbonifa authored 2 months ago
  
  33c28bbf
- test: incremented version for test release · 1ea2ef39
  mjbonifa authored 2 months ago
  
  1ea2ef39
- fix: issue with commit from #10 · 46480a80
  mjbonifa authored 2 months ago
  
  46480a80
- Merge branch '10-write-outline-document-structure' into 'dev' · 8cc66069
  mjbonifa authored 2 months ago
  8cc66069
- docs: added documentation directory structure, and initial tests ok mkdocs but... · 039c9ebc
  mjbonifa authored 2 months ago
  039c9ebc
- Merge branch '21-add-mypy-and-black-as-precommit-hook' into 'dev' · 9d3f9fae
  mjbonifa authored 2 months ago
  9d3f9fae
- test: add hatch run check to pyproject.toml to run all of the tools rather... · 2e58ef45
  mjbonifa authored 2 months ago
  2e58ef45
Feb 24, 2025
- started the precommit hook work, but seems more complex as it requires some... · 3a7d715c
  mjbonifa authored 2 months ago
  3a7d715c