Merge branch '23-refactor-pure-example-coding-directory-to-only-required-by-examples' into 'dev'

fix: removed clinical codes from clinical-codes-org not required by examples

Closes #23

See merge request meldb/concepts-processing!25

examples/codes/clinical-codes-org/Behaviours code lists/Alcohol intake/res47-alcohol-intake.csv

-code,coding_system,description,entity,list_name,upload_date
-136..00,Read,Alcohol consumption,test,451 - res47: Alcohol intake,25/07/2016
-1361.11,Read,Non drinker alcohol,test,451 - res47: Alcohol intake,25/07/2016
-1361.12,Read,Non-drinker alcohol,test,451 - res47: Alcohol intake,25/07/2016
-1362.11,Read,Drinks rarely,test,451 - res47: Alcohol intake,25/07/2016
-1362.12,Read,Drinks occasionally,test,451 - res47: Alcohol intake,25/07/2016
-136a.00,Read,Increasing risk drinking,test,451 - res47: Alcohol intake,25/07/2016
-136A.00,Read,Ex-trivial drinker (<1u/day),test,451 - res47: Alcohol intake,25/07/2016
-136b.00,Read,Feels should cut down drinking,test,451 - res47: Alcohol intake,25/07/2016
-136B.00,Read,Ex-light drinker - (1-2u/day),test,451 - res47: Alcohol intake,25/07/2016
-136c.00,Read,Higher risk drinking,test,451 - res47: Alcohol intake,25/07/2016
-136C.00,Read,Ex-moderate drinker - (3-6u/d),test,451 - res47: Alcohol intake,25/07/2016
-136d.00,Read,Lower risk drinking,test,451 - res47: Alcohol intake,25/07/2016
-136D.00,Read,Ex-heavy drinker - (7-9u/day),test,451 - res47: Alcohol intake,25/07/2016
-136e.00,Read,Declines to state current alcohol consumption,test,451 - res47: Alcohol intake,25/07/2016
-136E.00,Read,Ex-very heavy drinker-(>9u/d),test,451 - res47: Alcohol intake,25/07/2016
-136F.00,Read,Spirit drinker,test,451 - res47: Alcohol intake,25/07/2016
-136G.00,Read,Beer drinker,test,451 - res47: Alcohol intake,25/07/2016
-136H.00,Read,Drinks beer and spirits,test,451 - res47: Alcohol intake,25/07/2016
-136I.00,Read,Drinks wine,test,451 - res47: Alcohol intake,25/07/2016
-136J.00,Read,Social drinker,test,451 - res47: Alcohol intake,25/07/2016
-136K.00,Read,Alcohol intake above recommended sensible limits,test,451 - res47: Alcohol intake,25/07/2016
-136L.00,Read,Alcohol intake within recommended sensible limits,test,451 - res47: Alcohol intake,25/07/2016
-136M.00,Read,Current non drinker,test,451 - res47: Alcohol intake,25/07/2016
-136N.00,Read,Light drinker,test,451 - res47: Alcohol intake,25/07/2016
-136O.00,Read,Moderate drinker,test,451 - res47: Alcohol intake,25/07/2016
-136P.00,Read,Heavy drinker,test,451 - res47: Alcohol intake,25/07/2016
-136Q.00,Read,Very heavy drinker,test,451 - res47: Alcohol intake,25/07/2016
-136R.00,Read,Binge drinker,test,451 - res47: Alcohol intake,25/07/2016
-136S.00,Read,Hazardous alcohol use,test,451 - res47: Alcohol intake,25/07/2016
-136T.00,Read,Harmful alcohol use,test,451 - res47: Alcohol intake,25/07/2016
-136V.00,Read,Alcohol units per week,test,451 - res47: Alcohol intake,25/07/2016
-136W.00,Read,Alcohol misuse,test,451 - res47: Alcohol intake,25/07/2016
-136X.00,Read,Alcohol units consumed on heaviest drinking day,test,451 - res47: Alcohol intake,25/07/2016
-136Y.00,Read,Drinks in morning to get rid of hangover,test,451 - res47: Alcohol intake,25/07/2016
-136Z.00,Read,Alcohol consumption NOS,test,451 - res47: Alcohol intake,25/07/2016
-E23..12,Read,Alcohol problem drinking,test,451 - res47: Alcohol intake,25/07/2016
\ No newline at end of file

examples/codes/clinical-codes-org/Behaviours code lists/Physical activity/res47-physical-activity.csv

-code,coding_system,description,entity,list_name,upload_date
-1381,Read,Exercise physically impossible,test,450 - res47: Physical activity,25/07/2016
-1382,Read,Avoids even trivial exercise,test,450 - res47: Physical activity,25/07/2016
-1383,Read,Enjoys light exercise,test,450 - res47: Physical activity,25/07/2016
-1384,Read,Enjoys moderate exercise,test,450 - res47: Physical activity,25/07/2016
-1385,Read,Enjoys heavy exercise,test,450 - res47: Physical activity,25/07/2016
-1386,Read,Competitive athlete,test,450 - res47: Physical activity,25/07/2016
-1388,Read,Aerobic exercise 0 times/week,test,450 - res47: Physical activity,25/07/2016
-1389,Read,Aerobic exercise 1 time/week,test,450 - res47: Physical activity,25/07/2016
-138a.00,Read,GPPAQ physical activity index: moderately active,test,450 - res47: Physical activity,25/07/2016
-138A.00,Read,Aerobic exercise 2 times/week,test,450 - res47: Physical activity,25/07/2016
-138b.00,Read,GPPAQ physical activity index: active,test,450 - res47: Physical activity,25/07/2016
-138B.00,Read,Aerobic exercise 3+ times/week,test,450 - res47: Physical activity,25/07/2016
-138C.00,Read,Anaerobic exercise 0 times/wk,test,450 - res47: Physical activity,25/07/2016
-138D.00,Read,Anaerobic exercise 1 time/week,test,450 - res47: Physical activity,25/07/2016
-138E.00,Read,Anaerobic exercise 2 times/wk,test,450 - res47: Physical activity,25/07/2016
-138F.00,Read,Anaerobic exercise 3+ times/wk,test,450 - res47: Physical activity,25/07/2016
-138G.00,Read,Attends exercise classes,test,450 - res47: Physical activity,25/07/2016
-138H.00,Read,Enjoys intermediate exercise,test,450 - res47: Physical activity,25/07/2016
-138I.00,Read,FITT activity level 0; no mod/vig activity of 20 mins duratn,test,450 - res47: Physical activity,25/07/2016
-138J.00,Read,FITT activity level 1; 1-4 occas of mod/vig activit in 4 wks,test,450 - res47: Physical activity,25/07/2016
-138K.00,Read,FITT activity level 2; 5-11 occas of mod/vig activt in 4 wks,test,450 - res47: Physical activity,25/07/2016
-138L.00,Read,FITT activity level 3; 12+ occas of mod activity in 4 weeks,test,450 - res47: Physical activity,25/07/2016
-138M.00,Read,FITT activity level 4; 12+ occas of mod/vig activit in 4 wks,test,450 - res47: Physical activity,25/07/2016
-138N.00,Read,FITT activity level 5; 12+ occas of vig activity in 4 weeks,test,450 - res47: Physical activity,25/07/2016
-138O.00,Read,Takes inadequate exercise,test,450 - res47: Physical activity,25/07/2016
-138P.00,Read,Aerobic exercise three times a week,test,450 - res47: Physical activity,25/07/2016
-138Q.00,Read,Aerobic exercise four times a week,test,450 - res47: Physical activity,25/07/2016
-138R.00,Read,Aerobic exercise five times a week,test,450 - res47: Physical activity,25/07/2016
-138S.00,Read,Declined referral to physical exercise programme,test,450 - res47: Physical activity,25/07/2016
-138T.00,Read,30 mins/day of at least mod intensty physc activity >=5 week,test,450 - res47: Physical activity,25/07/2016
-138V.00,Read,30 minutes a day of at least moderate intensity walk >=5week,test,450 - res47: Physical activity,25/07/2016
-138W.00,Read,Less than 30 mins/day of at least mod int physc act >=5 week,test,450 - res47: Physical activity,25/07/2016
-138X.00,Read,GPPAQ physical activity index: inactive,test,450 - res47: Physical activity,25/07/2016
-138Y.00,Read,GPPAQ physical activity index: moderately inactive,test,450 - res47: Physical activity,25/07/2016
\ No newline at end of file

examples/codes/clinical-codes-org/Behaviours code lists/Smoking status/res56-smoking-status.csv

-code,coding_system,description,entity,list_name,upload_date,status
-137..00,Read,Tobacco consumption,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1371,Read,Never smoked tobacco,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-137..11,Read,Smoker - amount smoked,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1371.11,Read,Non-smoker,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-1372,Read,Trivial smoker - < 1 cig/day,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1372.11,Read,Occasional smoker,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1373,Read,Light smoker - 1-9 cigs/day,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1374,Read,Moderate smoker - 10-19 cigs/d,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1375,Read,Heavy smoker - 20-39 cigs/day,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1376,Read,Very heavy smoker - 40+cigs/d,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-1377,Read,Ex-trivial smoker (<1/day),diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-1378,Read,Ex-light smoker (1-9/day),diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-1379,Read,Ex-moderate smoker (10-19/day),diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137a.00,Read,Pipe tobacco consumption,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137A.00,Read,Ex-heavy smoker (20-39/day),diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137b.00,Read,Ready to stop smoking,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137B.00,Read,Ex-very heavy smoker (40+/day),diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137c.00,Read,Thinking about stopping smoking,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137C.00,Read,Keeps trying to stop smoking,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137d.00,Read,Not interested in stopping smoking,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137D.00,Read,Admitted tobacco cons untrue ?,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137e.00,Read,Smoking restarted,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137E.00,Read,Tobacco consumption unknown,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137F.00,Read,Ex-smoker - amount unknown,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137G.00,Read,Trying to give up smoking,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137H.00,Read,Pipe smoker,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137I.00,Read,Passive smoker,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-137j.00,Read,Ex-cigarette smoker,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137J.00,Read,Cigar smoker,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137K.00,Read,Stopped smoking,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137K000,Read,Recently stopped smoking,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137l.00,Read,Ex roll-up cigarette smoker,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137L.00,Read,Current non-smoker,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-137m.00,Read,Failed attempt to stop smoking,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137M.00,Read,Rolls own cigarettes,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137N.00,Read,Ex pipe smoker,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137O.00,Read,Ex cigar smoker,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137P.00,Read,Cigarette smoker,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137P.11,Read,Smoker,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137Q.00,Read,Smoking started,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137Q.11,Read,Smoking restarted,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137R.00,Read,Current smoker,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137S.00,Read,Ex smoker,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137T.00,Read,Date ceased smoking,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-137U.00,Read,Not a passive smoker,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-137V.00,Read,Smoking reduced,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137W.00,Read,Chews tobacco,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137X.00,Read,Cigarette consumption,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137Y.00,Read,Cigar consumption,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-137Z.00,Read,Tobacco consumption NOS,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-8CAL.00,Read,Smoking cessation advice,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-8H7i.00,Read,Referral to smoking cessation advisor,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-8HkQ.00,Read,Referral to NHS stop smoking service,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-8HTK.00,Read,Referral to stop-smoking clinic,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-8IAj.00,Read,Smoking cessation advice declined,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-9km..00,Read,Ex-smoker annual review - enhanced services administration,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-9km..11,Read,Ex-smoker annual review,diagnostic,649 - res56: smoking status,16/03/2017,ex smoker
-9kn..00,Read,Non-smoker annual review - enhanced services administration,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-9kn..11,Read,Non-smoker annual review,diagnostic,649 - res56: smoking status,16/03/2017,never smoker
-9ko..00,Read,Current smoker annual review - enhanced services admin,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-9ko..11,Read,Current smoker annual review,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
-9NS0200,Read,Referral for smoking cessation service offered,diagnostic,649 - res56: smoking status,16/03/2017,current smoker
\ No newline at end of file

examples/codes/clinical-codes-org/Motor neurone disease/phenotype_PH62_ver_124_concepts_20230719T112819.csv

-code,description,coding_system,concept_id,concept_version_id,concept_name,phenotype_id,phenotype_version_id,phenotype_name,code_attributes
-7Q04100,Amyotrophic lateral sclerosis drugs Band 1,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '109020.0', 'Category': 'History of Motor neuron disease'}"
-F15..00,Anterior horn cell disease,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '21889.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152.00,Motor neurone disease,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '4796.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152000,Amyotrophic lateral sclerosis,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '36433.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152100,Progressive muscular atrophy,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '30987.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152111,Duchenne Aran muscular atrophy,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '7470.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152200,Progressive bulbar palsy,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '27377.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152300,Pseudobulbar palsy,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '18084.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152400,Primary lateral sclerosis,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '20845.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F152z00,Motor neurone disease NOS,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '20120.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F15y.00,Other anterior horn cell disease,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '71400.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-F15z.00,Anterior horn cell disease NOS,Read codes v2,C852,2843,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Medcode': '58729.0', 'Category': 'Diagnosis of Motor neuron disease'}"
-109020,History of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Amyotrophic lateral sclerosis drugs Band 1', 'Readcode': '7Q04100'}"
-18084,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Pseudobulbar palsy', 'Readcode': 'F152300'}"
-20120,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Motor neurone disease NOS', 'Readcode': 'F152z00'}"
-20845,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Primary lateral sclerosis', 'Readcode': 'F152400'}"
-21889,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Anterior horn cell disease', 'Readcode': 'F15..00'}"
-27377,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Progressive bulbar palsy', 'Readcode': 'F152200'}"
-30987,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Progressive muscular atrophy', 'Readcode': 'F152100'}"
-36433,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Amyotrophic lateral sclerosis', 'Readcode': 'F152000'}"
-4796,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Motor neurone disease', 'Readcode': 'F152.00'}"
-58729,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Anterior horn cell disease NOS', 'Readcode': 'F15z.00'}"
-71400,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Other anterior horn cell disease', 'Readcode': 'F15y.00'}"
-7470,Diagnosis of Motor neuron disease,Med codes,C853,2845,Motor neuron disease - Primary care,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'ReadcodeDescr': 'Duchenne Aran muscular atrophy', 'Readcode': 'F152111'}"
-G12.2,Motor neuron disease,ICD10 codes,C854,2847,Motor neuron disease - Secondary care - Diagnoses,PH62,124,Motor neuron disease,"{'Disease': 'Motor neuron disease', 'Category': 'Diagnosis of Motor neuron disease'}"
\ No newline at end of file

examples/codes/clinical-codes-org/Obsessive Compulsive Disorder/phenotype_PH223_ver_446_concepts_20230719T114228.csv

-code,description,coding_system,concept_id,concept_version_id,concept_name,phenotype_id,phenotype_version_id,phenotype_name,code_attributes
-E203.00,Obsessive-compulsive disorders,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '3208.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-E203.11,Anancastic neurosis,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '47365.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-E203000,Compulsive neurosis,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '5678.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-E203100,Obsessional neurosis,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '2030.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-E203z00,Obsessive-compulsive disorder NOS,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '15566.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42.00,[X]Obsessive - compulsive disorder,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '5304.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42.11,[X]Anankastic neurosis,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '24251.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42.12,[X]Obsessive-compulsive neurosis,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '21836.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42000,[X]Predominantly obsessional thoughts or ruminations,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '20634.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42100,[X]Predominantly compulsive acts [obsessional rituals],Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '22019.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42200,[X]Mixed obsessional thoughts and acts,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '18399.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42y00,[X]Other obsessive-compulsive disorders,Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '38809.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-Eu42z00,"[X]Obsessive-compulsive disorder, unspecified",Read codes v2,C1320,3779,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Medcode': '22721.0', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
-15566,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': 'Obsessive-compulsive disorder NOS', 'Readcode': 'E203z00'}"
-18399,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Mixed obsessional thoughts and acts', 'Readcode': 'Eu42200'}"
-2030,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': 'Obsessional neurosis', 'Readcode': 'E203100'}"
-20634,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Predominantly obsessional thoughts or ruminations', 'Readcode': 'Eu42000'}"
-21836,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Obsessive-compulsive neurosis', 'Readcode': 'Eu42.12'}"
-22019,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Predominantly compulsive acts [obsessional rituals]', 'Readcode': 'Eu42100'}"
-22721,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Obsessive-compulsive disorder, unspecified', 'Readcode': 'Eu42z00'}"
-24251,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Anankastic neurosis', 'Readcode': 'Eu42.11'}"
-3208,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': 'Obsessive-compulsive disorders', 'Readcode': 'E203.00'}"
-38809,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Other obsessive-compulsive disorders', 'Readcode': 'Eu42y00'}"
-47365,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': 'Anancastic neurosis', 'Readcode': 'E203.11'}"
-5304,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': '[X]Obsessive - compulsive disorder', 'Readcode': 'Eu42.00'}"
-5678,Diagnosis of Obsessive-compulsive disorder,Med codes,C1321,3781,Obsessive-compulsive disorder - Primary care,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'ReadcodeDescr': 'Compulsive neurosis', 'Readcode': 'E203000'}"
-F42,Obsessive-compulsive disorder,ICD10 codes,C1322,3783,Obsessive-compulsive disorder - Secondary care - Diagnoses,PH223,446,Obsessive-compulsive disorder,"{'Disease': 'Obsessive-compulsive disorder', 'Category': 'Diagnosis of Obsessive-compulsive disorder'}"
\ No newline at end of file

examples/codes/clinical-codes-org/Palliative care codes/res176-palliative-and-end-of-life-care.csv

-code,coding_system,description,entity,list_name,upload_date
-66S3.00,Read,full care by hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-66S4.00,Read,shared care - hospice / gp,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8B2a.00,Read,prescription of palliative care anticipatory medication,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BA2.11,Read,end of life care,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAe.00,Read,anticipatory palliative care,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAN.00,Read,community specialist palliative care,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAP.00,Read,specialist palliative care,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAQ.00,Read,final days pathway,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAR.00,Read,specialist palliative care treatment - inpatient,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAS.00,Read,specialist palliative care treatment - daycare,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BAT.00,Read,specialist palliative care treatment - outpatient,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BJ1.00,Read,palliative treatment,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BMM.00,Read,issue of palliative care anticipatory medication box,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8BMM.11,Read,issue of palliative care just in case box,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8CM1.00,Read,on gold standards palliative care framework,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8CMW300,Read,end of life care pathway,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8H7g.00,Read,referral to palliative care service,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8Hg0.00,Read,discharged from community specialist palliative care team,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8Hga.00,Read,discharge from hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HgX.00,Read,discharge from palliative care service,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HH7.00,Read,referred to community specialist palliative care team,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HX..00,Read,admission to hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HX0.00,Read,urgent admission to hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HX1.00,Read,routine admission to hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HX2.00,Read,admission to hospice for respite,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-8HY..00,Read,referral to hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-949A.00,Read,patient died in hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-949G.00,Read,patient died in hospice community lodge,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9b1B.00,Read,hospice - nhs,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9b1C.00,Read,hospice - independent,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9b74.00,Read,hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9b74000,Read,hospice community lodge,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9b9B.00,Read,palliative medicine,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9c0L000,Read,planned palliative oncology treatment,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9c0P.00,Read,current palliative oncology treatment,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9e02.00,Read,notif to primary care oohs of palliative care plan in place,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9Ng7.00,Read,on end of life care register,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9NgD.00,Read,under care of palliative care service,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9Nh0.00,Read,under the care of community palliative care team,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9NkJ.00,Read,seen in hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9NlJ.00,Read,seen by palliative care service,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9NNd.00,Read,under care of palliative care specialist nurse,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9NNf000,Read,under care of palliative care physician,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-9NNZ.00,Read,has end of life care pathway key worker,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-M270300,Read,hospice acquired pressure ulcer,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-Z172.00,Read,palliative care,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZL18R00,Read,under care of palliative care physician,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZL5AP00,Read,referral to palliative care physician,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZL9AR00,Read,seen by palliative care physician,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZLD3R00,Read,discharge by palliative care physician,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZLE6P00,Read,discharge from palliative care service,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZLF1.00,Read,discharge from hospice,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZLF1100,Read,discharge from hospice day hospital,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
-ZV57C00,Read,[v]palliative care,diagnostic,883 - res176: Palliative and end of life care,18/02/2021
\ No newline at end of file

examples/codes/clinical-codes-org/Peptic ulcer/phenotype_PH1091_ver_2385_concepts_20230719T122902.csv

-code,description,coding_system,concept_id,concept_version_id,concept_name,phenotype_id,phenotype_version_id,phenotype_name,Medcode
-14C1.00,H/O: peptic ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,2812
-14C1.11,H/O: duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,6321
-14C1.12,H/O: gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,7108
-7612111,Balfour excision of gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,92695
-7612500,Resection of gastric ulcer by cautery,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,64710
-761J.00,Operations on gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,23688
-761J.11,Stomach ulcer operations,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,6865
-761J000,Closure of perforated gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,20677
-761J100,Closure of gastric ulcer NEC,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,64014
-761J111,Suture of ulcer of stomach NEC,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,70005
-761Jy00,Other specified operation on gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,94104
-761Jz00,Operation on gastric ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,33914
-7627,Operations on duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,5928
-7627000,Closure of perforated duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,4741
-7627100,Suture of duodenal ulcer not elsewhere classified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,37268
-7627y00,Other specified operation on duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,56005
-7627z00,Operation on duodenal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,55933
-J102000,Peptic ulcer of oesophagus,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,24021
-J11..00,Gastric ulcer - (GU),Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,1262
-J11..11,Prepyloric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,6333
-J11..12,Pyloric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,3101
-J110.00,Acute gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,24040
-J110000,Acute gastric ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,64165
-J110200,Acute gastric ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,14671
-J110400,Acute gastric ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,109546
-J110y00,Acute gastric ulcer unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,24342
-J110z00,Acute gastric ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,44324
-J111.00,Chronic gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,18654
-J111000,Chronic gastric ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,48946
-J111200,Chronic gastric ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,53336
-J111211,Perforated chronic gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,11104
-J111400,Chronic gastric ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,67356
-J111y00,Chronic gastric ulcer unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,64556
-J111z00,Chronic gastric ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,44309
-J112.00,Anti-platelet induced gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,63001
-J112z00,Anti-platelet induced gastric ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,89227
-J113.00,Non steroidal anti inflammatory drug induced gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,89023
-J11y.00,Unspecified gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,53081
-J11y000,Unspecified gastric ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,73338
-J11y200,Unspecified gastric ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,36461
-J11y400,Unspecified gastric ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,73697
-J11yz00,Unspecified gastric ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,44284
-J11z.00,Gastric ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,29771
-J11z.12,Multiple gastric ulcers,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,52323
-J12..00,Duodenal ulcer - (DU),Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,352
-J120.00,Acute duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,18027
-J120000,Acute duodenal ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,44335
-J120200,Acute duodenal ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,18324
-J120400,Acute duodenal ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,73417
-J120y00,Acute duodenal ulcer unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,53822
-J120z00,Acute duodenal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,53797
-J121.00,Chronic duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,9853
-J121000,Chronic duodenal ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,33438
-J121200,Chronic duodenal ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,37643
-J121211,Perforated chronic duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,23087
-J121400,Chronic duodenal ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,44073
-J121y00,Chronic duodenal ulcer unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,52138
-J121z00,Chronic duodenal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,51406
-J122.00,Duodenal ulcer disease,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,22918
-J123.00,Duodenal erosion,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,3462
-J124.00,Recurrent duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,29317
-J125.00,Anti-platelet induced duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,89234
-J126.00,Non steroidal anti inflammatory drug induced duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,85989
-J12y.00,Unspecified duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,53669
-J12y000,Unspecified duodenal ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,71150
-J12y200,Unspecified duodenal ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,657
-J12y400,Unspecified duodenal ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,71904
-J12yz00,Unspecified duodenal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,65737
-J12z.00,Duodenal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,15175
-J13..00,Peptic ulcer - (PU) site unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,670
-J13..11,Stress ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,15821
-J130.00,Acute peptic ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,32856
-J130000,Acute peptic ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,68661
-J130200,Acute peptic ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,5521
-J130y00,Acute peptic ulcer unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,67711
-J130z00,Acute peptic ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,50048
-J131.00,Chronic peptic ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,40997
-J131000,Chronic peptic ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,99430
-J131200,Chronic peptic ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,37620
-J131400,Chronic peptic ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,52313
-J131y00,Chronic peptic ulcer unspecified,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,70390
-J131z00,Chronic peptic ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,69663
-J13y.00,Unspecified peptic ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,50497
-J13y000,Unspecified peptic ulcer without mention of complication,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,67082
-J13y200,Unspecified peptic ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,64111
-J13y400,Unspecified peptic ulcer with obstruction,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,99670
-J13yz00,Unspecified peptic ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,60249
-J13z.00,Peptic ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,19928
-J14..00,Gastrojejunal ulcer (GJU),Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,23082
-J14..12,Gastrocolic ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,64913
-J14..13,Jejunal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,9981
-J140.00,Acute gastrojejunal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,45184
-J140200,Acute gastrojejunal ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,102177
-J140z00,Acute gastrojejunal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,42274
-J141.00,Chronic gastrojejunal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,96090
-J14y.00,Unspecified gastrojejunal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,63482
-J14y200,Unspecified gastrojejunal ulcer with perforation,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,15979
-J14yz00,Unspecified gastrojejunal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,66092
-J14z.00,Gastrojejunal ulcer NOS,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,15403
-J17y800,Healed gastric ulcer leaving a scar,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,18319
-ZV12711,[V]Personal history of peptic ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,26261
-ZV12712,[V]Personal history of duodenal ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,40489
-ZV12C00,[V] Personal history of gastric ulcer,Read codes v2,C3359,10255,Peptic ulcer disease Read codes - Elixhauser,PH1091,2385,Peptic ulcer disease - Elixhauser primary care,41271
\ No newline at end of file

examples/codes/clinical-codes-org/Personality disorders/res38-personality-disorder.csv

-code,coding_system,description,entity,list_name,upload_date
-E21..00,Read,Personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-E210.00,Read,Paranoid personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E211.00,Read,Affective personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E211000,Read,Unspecified affective personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21..11,Read,Neurotic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E211100,Read,Hypomanic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E211200,Read,Depressive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E211300,Read,Cyclothymic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E211z00,Read,Affective personality disorder NOS,diagnostic,381 - res38: Personality disorder,20/01/2016
-E212.00,Read,Schizoid personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E212000,Read,Unspecified schizoid personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E212z00,Read,Schizoid personality disorder NOS,diagnostic,381 - res38: Personality disorder,20/01/2016
-E213.00,Read,Explosive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E214.00,Read,Compulsive personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-E214000,Read,Anankastic personality,diagnostic,381 - res38: Personality disorder,20/01/2016
-E214.11,Read,Anancastic personality,diagnostic,381 - res38: Personality disorder,20/01/2016
-E214z00,Read,Compulsive personality disorder NOS,diagnostic,381 - res38: Personality disorder,20/01/2016
-E215.00,Read,Histrionic personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-E215000,Read,Unspecified histrionic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E215.11,Read,Hysterical personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-E215z00,Read,Histrionic personality disorder NOS,diagnostic,381 - res38: Personality disorder,20/01/2016
-E216.00,Read,Inadequate personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E217.00,Read,Antisocial or sociopathic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y.00,Read,Other personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y000,Read,Narcissistic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y100,Read,Avoidant personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y200,Read,Borderline personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y300,Read,Passive-aggressive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y400,Read,Eccentric personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y500,Read,Immature personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y600,Read,Masochistic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21y700,Read,Psychoneurotic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21yz00,Read,Other personality disorder NOS,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21z.00,Read,Personality disorder NOS,diagnostic,381 - res38: Personality disorder,20/01/2016
-E21z.11,Read,Psychopathic personality,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu06000,Read,[X]Organic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu06011,Read,[X]Organic pseudopsychopathic personality,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu21.17,Read,[X]Pseudopsychopathic schizophrenia,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu21.18,Read,[X]Schizotypal personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu34011,Read,[X]Affective personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu34112,Read,[X]Depressive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60.00,Read,[X]Specific personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60000,Read,[X]Paranoid personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60013,Read,[X]Querulant personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60014,Read,[X]Sensitive paranoid personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60100,Read,[X]Schizoid personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60200,Read,[X]Dissocial personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60212,Read,[X]Antisocial personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60213,Read,[X]Asocial personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60214,Read,[X]Psychopathic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60215,Read,[X]Sociopathic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60300,Read,[X]Emotionally unstable personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60311,Read,[X]Aggressive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60312,Read,[X]Borderline personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60313,Read,[X]Explosive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60400,Read,[X]Histrionic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60411,Read,[X]Hysterical personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60412,Read,[X]Psychoinfantile personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60500,Read,[X]Anankastic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60511,Read,[X]Compulsive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60512,Read,[X]Obsessional personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60513,Read,[X]Obsessive-compulsive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60600,Read,[X]Anxious [avoidant] personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60700,Read,[X]Dependent personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60711,Read,[X]Asthenic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60712,Read,[X]Inadequate personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60713,Read,[X]Passive personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60714,Read,[X]Self defeating personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60y00,Read,[X]Other specific personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60y11,Read,[X]Eccentric personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60y12,Read,[X]Haltlose type personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60y13,Read,[X]Immature personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60y14,Read,[X]Narcissistic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60y16,Read,[X]Psychoneurotic personality disorder,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu60z00,Read,[X]Personality disorder; unspecified,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu61.00,Read,[X]Mixed and other personality disorders,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu84511,Read,[X]Autistic psychopathy,diagnostic,381 - res38: Personality disorder,20/01/2016
-Eu94211,Read,[X]Affectionless psychopathy,diagnostic,381 - res38: Personality disorder,20/01/2016
\ No newline at end of file