Commits · e396067bd788354ea3265e2f9f227b80352b5d4b · meldb / concepts-processing · GitLab

Apr 29, 2025
- (fix) diff tests where not configured correctly, with the right old phen directory · adc48e95
  mjbonifa authored 6 months ago
  
  adc48e95
Apr 23, 2025
- (feat) flag no metadata in phen map output · 47dcd2eb
  Jakub Dylag authored 6 months ago
  
  47dcd2eb
- (feat) flag do not translate in phen map · c5bbb8ac
  Jakub Dylag authored 6 months ago
  
  c5bbb8ac
Apr 10, 2025
- (feat) flag to stop phen diff from check config.yml if it doesn't exist · 230240d1
  Jakub Dylag authored 6 months ago
  
  230240d1
Apr 08, 2025
- (bug) phen.py code_errors mask cannot be None · 1aeab1dc
  Jakub Dylag authored 6 months ago
  
  1aeab1dc
Apr 03, 2025
- metadata config schema · 924e37bc
  Jakub Dylag authored 7 months ago
  
  924e37bc
- (fix) Add metadata dict values for each concept set · 62c4b649
  Jakub Dylag authored 7 months ago
  
  62c4b649
Mar 29, 2025
- (fix) fixed diff so it works with list of paths rather than a single file.... · 4eae3f81
  mjbonifa authored 7 months ago
  4eae3f81
Mar 28, 2025
- Allow multiple files per concept set - update map function · 0a627e67
  Jakub Dylag authored 7 months ago
  
  0a627e67
- Remove metadata processing from map function · a6636f57
  Jakub Dylag authored 7 months ago
  
  a6636f57
- Allow multiple files per concept set - loop over map function · 46d4752f
  Jakub Dylag authored 7 months ago
  
  46d4752f
- Allow multiple files per concept set - validation passed · 3c3ae717
  Jakub Dylag authored 7 months ago
  
  3c3ae717
- Allow mulitple files per concept set - Typing Validation · 7ec0e5c5
  Jakub Dylag authored 7 months ago
  
  7ec0e5c5
Mar 25, 2025
- (fix) removed metadata from the examples, found bug in test_diff that included... · df2271e2
  mjbonifa authored 7 months ago
  df2271e2
Mar 21, 2025
- remove test for duplicated concept-set names · 2edc9684
  Jakub Dylag authored 7 months ago
  
  2edc9684
Mar 11, 2025
- (fix) versions now increment from tags with a v prefix but then continue... · f80c8367
  mjbonifa authored 7 months ago
  f80c8367
- (docs) updated documeantion and private variables/functions. Closes #55 · 7a1fe5ce
  mjbonifa authored 7 months ago
  
  7a1fe5ce
- (docs) refactored docs. changed yaml to yaml extensions · 54204dd4
  mjbonifa authored 7 months ago
  
  54204dd4
Mar 10, 2025
- (fix) fixed all typing and ready for documentation · 9254ae24
  mjbonifa authored 7 months ago
  
  9254ae24
Mar 09, 2025
- (docs) initial version of md api docs · 25457a8e
  mjbonifa authored 7 months ago
  
  25457a8e
- added pdocs document generation using the command hatch run docs. Creates html... · 3f1ca235
  mjbonifa authored 7 months ago
  3f1ca235
Mar 07, 2025
- (docs) started to write the docstrings · f710dfd7
  mjbonifa authored 7 months ago
  
  f710dfd7
- (feature) Added forking existing remote and publishing to a new repo. Needed... · 89912789
  mjbonifa authored 7 months ago
  89912789
Mar 06, 2025
- (refactor) Updated diff workflow to provide defaults and flexibility. Closes #48 · 2d2d2a60
  mjbonifa authored 7 months ago
  
  2d2d2a60
- (fix) changed concept-set to concept-sets as more intuitive due to the plural... · 68944076
  mjbonifa authored 7 months ago
  68944076
- (fix) Changed the versioning of phenotypes to semantic versioning using the... · 9df8d5d2
  mjbonifa authored 7 months ago
  9df8d5d2
- (refactor) Changed codes to concepts directory for alignment with OMOP. Closes #52 · 1e099555
  mjbonifa authored 7 months ago
  
  1e099555
Feb 27, 2025
- fix: readded metadata to phen output. This is now done after the translation... · 7ccf8657
  mjbonifa authored 8 months ago
  7ccf8657
- fix: started to add the metadata back in, the translation function is trickly... · 5b3b1d29
  mjbonifa authored 8 months ago
  5b3b1d29
- fix: moved omop export to concept-sets, moved concept set csv files to... · 7fdebb00
  mjbonifa authored 8 months ago
  7fdebb00
- fix: added version message to publish · e6ab6fbc
  mjbonifa authored 8 months ago
  
  e6ab6fbc
Feb 26, 2025
- fix: yaml library dump strips all quotes from the output and there's no... · 4b77e5d3
  mjbonifa authored 8 months ago
  4b77e5d3
- feature: added -r option to connect to a remote repo on publication. This is a... · 820b8677
  mjbonifa authored 8 months ago
  820b8677
- fix: added map definition to the config.yaml so that we know which maps are... · e549bf4b
  mjbonifa authored 8 months ago
  e549bf4b
- fix: had to resolve the phen_path to full path rather than using the relative... · 28fde5f6
  mjbonifa authored 8 months ago
  28fde5f6
- test: added tests for diff between config 1, 2, 3 in test_diff. Updated the... · ba8a7ccb
  mjbonifa authored 8 months ago
  ba8a7ccb
Feb 25, 2025
- fix: error writing .gitignore with spaces before *.db and other lines. Closes #39 · 7221405d
  mjbonifa authored 8 months ago
  
  7221405d
- fix. removed contributing.md from mkdocs · 900c4949
  mjbonifa authored 8 months ago
  
  900c4949
- fix: added schema validation using Cerberus to the validation in phen. Closes #16 · 8bda4c7c
  mjbonifa authored 8 months ago
  
  8bda4c7c
Feb 24, 2025
- started the precommit hook work, but seems more complex as it requires some... · 3a7d715c
  mjbonifa authored 8 months ago
  3a7d715c