Commits · 61-feature-add-optional-backwards-mapping-for-consistency-with-older-version · meldb / concepts-processing

May 16, 2025
- (docs) update api docs · 38bb2dc8
  Jakub Dylag authored 2 days ago
  
  38bb2dc8
May 15, 2025
- Code Formatting · 73f5dc15
  Jakub Dylag authored 2 days ago
  
  73f5dc15
May 01, 2025
- (feat) phen map flag to reverse translation · 7323fe6a
  Jakub Dylag authored 2 weeks ago
  
  7323fe6a
Apr 29, 2025
- (fix) pytest test_diff() not configured correcty, with right old phen directory · cd6282be
  Jakub Dylag authored 2 weeks ago
  
  cd6282be
- Merge branch '60-tests-fail-after-merge-of-57' into 'dev' · e396067b
  mjbonifa authored 2 weeks ago
  
  (fix) diff tests where not configured correctly, with the right old phen directory Closes #60 See merge request meldb/concepts-processing!47
  e396067b
- (fix) diff tests where not configured correctly, with the right old phen directory · adc48e95
  mjbonifa authored 2 weeks ago
  
  adc48e95
- Merge branch '57-fix-convertion-of-meldb-sail-phenotypes-to-acmc-0-1-12' into 'dev' · 3bdb8248
  mjbonifa authored 2 weeks ago
  
  (fix) fixed diff so it works with list of paths rather than a single file.... Closes #57 See merge request meldb/concepts-processing!46
  3bdb8248
Apr 23, 2025
- (feat) flag no metadata in phen map output · 47dcd2eb
  Jakub Dylag authored 3 weeks ago
  
  47dcd2eb
- (feat) flag do not translate in phen map · c5bbb8ac
  Jakub Dylag authored 3 weeks ago
  
  c5bbb8ac
Apr 10, 2025
- (feat) flag to stop phen diff from check config.yml if it doesn't exist · 230240d1
  Jakub Dylag authored 1 month ago
  
  230240d1
Apr 08, 2025
- (bug) phen.py code_errors mask cannot be None · 1aeab1dc
  Jakub Dylag authored 1 month ago
  
  1aeab1dc
Apr 04, 2025
- (bug) parse.py unknown check_regex param · 75ffab97
  Jakub Dylag authored 1 month ago
  
  75ffab97
- (bug) parse.py "read3" column named "Read3" · 3e3baa3f
  Jakub Dylag authored 1 month ago
  
  3e3baa3f
Apr 03, 2025
- metadata config schema · 924e37bc
  Jakub Dylag authored 1 month ago
  
  924e37bc
- (fix) Add metadata dict values for each concept set · 62c4b649
  Jakub Dylag authored 1 month ago
  
  62c4b649
Mar 29, 2025
- (fix) fixed diff so it works with list of paths rather than a single file.... · 4eae3f81
  mjbonifa authored 1 month ago
  
  (fix) fixed diff so it works with list of paths rather than a single file. Merged dev into 57 branch to keep it up with the latest changes. Removed copy from a test which was from the previous implementation of diff. All tests pass. #57
  4eae3f81
- Merge branch 'dev' into 57-fix-convertion-of-meldb-sail-phenotypes-to-acmc-0-1-12 · 0036561e
  mjbonifa authored 1 month ago
  
  0036561e
- (docs) updates to api documentation · 7ce48fbd
  mjbonifa authored 1 month ago
  
  7ce48fbd
Mar 28, 2025
- Allow multiple files per concept set - update yaml examples · 8fe19073
  Jakub Dylag authored 1 month ago
  
  8fe19073
- Allow multiple files per concept set - update map function · 0a627e67
  Jakub Dylag authored 1 month ago
  
  0a627e67
- Remove metadata processing from map function · a6636f57
  Jakub Dylag authored 1 month ago
  
  a6636f57
- Allow multiple files per concept set - loop over map function · 46d4752f
  Jakub Dylag authored 1 month ago
  
  46d4752f
- Allow multiple files per concept set - validation passed · 3c3ae717
  Jakub Dylag authored 1 month ago
  
  3c3ae717
- Allow mulitple files per concept set - Typing Validation · 7ec0e5c5
  Jakub Dylag authored 1 month ago
  
  7ec0e5c5
Mar 26, 2025
- Merge branch 'dev' of https://git.soton.ac.uk/meldb/concepts-processing into dev · 4a4984d1
  Jakub Dylag authored 1 month ago
  
  4a4984d1
- (Docs) Simple Local workflow Example · 859d27c7
  Jakub Dylag authored 1 month ago
  
  859d27c7
Mar 25, 2025

Merge branch '58-fix-remove-metadata-tag-from-examples' into 'dev' · aa389538

mjbonifa authored 1 month ago

(fix) removed metadata from the examples, found bug in test_diff that included...

See merge request meldb/concepts-processing!44

aa389538

(fix) removed metadata from the examples, found bug in test_diff that included... · df2271e2

mjbonifa authored 1 month ago

(fix) removed metadata from the examples, found bug in test_diff that included the previous copy code which caused the test to fail. Addresses issue found in #57. Closes #58

df2271e2

Mar 21, 2025
- remove test for duplicated concept-set names · 2edc9684
  Jakub Dylag authored 1 month ago
  
  2edc9684
Mar 12, 2025
- (docs) fixed config.yaml references in readme and docs · df0e6cee
  mjbonifa authored 2 months ago
  
  df0e6cee
- (docs) fixed config.yaml references in readme and docs · 1bdd3a79
  mjbonifa authored 2 months ago
  
  1bdd3a79
Mar 11, 2025
- UPdated version to 0.1.1 · 50a9ef47
  mjbonifa authored 2 months ago
  
  50a9ef47
- temporary removal of test assertion to check outputs in diff · 90106ca4
  mjbonifa authored 2 months ago
  
  90106ca4
- Merge branch '56-fix-support-versions-with-v-prefix-on-forked-repos' into 'dev' · 734643ca
  mjbonifa authored 2 months ago
  
  (fix) versions now increment from tags with a v prefix but then continue... Closes #56 See merge request meldb/concepts-processing!39
  734643ca
- (fix) versions now increment from tags with a v prefix but then continue... · f80c8367
  mjbonifa authored 2 months ago
  
  (fix) versions now increment from tags with a v prefix but then continue without the v, e.g. if v1.2.1 is the latest tag and we increment the major version the next version will be 2.0.0. closes #56
  f80c8367
- (fix) added twine to the development dependancies · 0bbb8d04
  mjbonifa authored 2 months ago
  
  0bbb8d04
- updated version to 1.0.0 · 5b2ab3d2
  mjbonifa authored 2 months ago
  
  5b2ab3d2
- Merge branch '55-docs-user-private-variables-and-functions-for-docs' into 'dev' · ebe50273
  mjbonifa authored 2 months ago
  
  (docs) updated documeantion and private variables/functions. Closes #55 Closes #55 See merge request meldb/concepts-processing!37
  ebe50273
- (docs) updated documeantion and private variables/functions. Closes #55 · 7a1fe5ce
  mjbonifa authored 2 months ago
  
  7a1fe5ce
- (docs) refactored docs. changed yaml to yaml extensions · 54204dd4
  mjbonifa authored 2 months ago
  
  54204dd4