fix: added map definition to the config.yaml so that we know which maps are...

fix: added map definition to the config.yaml so that we know which maps are expected for the phenotype. It is still possible to run one of them using the -t option but they must be specified the config file. This means a user can run acmc phen map and all the required codes are created. It also reduces the chance of inconsistency between the map files generated between versions. It does not remove it entirely because it is still possible for a user to only run with a subset of the coding types but that should be discouraged. We retain the option for phenottype development because you might not want to run everything all of the time due the time it takes. Closes #40.