config2.yaml

phenotype:
  version: "0.0.0"
  omop:
    vocabulary_id: "ACMC_Example_2"
    vocabulary_name: "ACMC example 2 phenotype"
    vocabulary_reference: "https://www.it-innovation.soton.ac.uk/projects/meldb/concept-processing/example"
  map:
    - "read2"
    - "read3"    
  concept_sets:
    - name: "CVD_EVENTS"
      file: 
        path: "clinical-codes-org/Cardiovascular events (ICD10)/res52-cardiovascular-events-icd10.csv"
        columns:
          icd10: "code"
      metadata: {}
    - name: "DID_NOT_ATTEND"
      file: 
        path: "clinical-codes-org/Non-attendance codes/res201-did-not-attend-appointment.csv"
        columns:
          read2: "code"
      metadata: {}