initial commit

.gitignore

+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

00-preface.Rmd

+\phantomsection
+\pdfbookmark[0]{Title Page}{title}
+ <!-- Title, name and date -->
+ \title{\LARGE {\bf My awesome thesis dissertaion title}\\
+  \vspace*{6mm}}
+ \author{Monika Kudelska}
+\maketitle
+<!-- % Preface files - see mkthesis.sty for what these should be. -->
+\preface
+\body
\ No newline at end of file

01-intro.Rmd

+# Introduction {#intro}
+
+Background and introduction chapter
\ No newline at end of file

02-methods.Rmd

+# Methods {#methods}
+
+Methods chapter.
\ No newline at end of file

03-results-01.Rmd

+# Results {#results-1}
+
+First results chapter.
+
+(ref:mpg-plot) Car engine size versus fuel efficiency. The mpg data contains observations collected by the US Environmental Protection Agency on 38 models of car. 
+
+```{r mpg,echo=FALSE,fig.cap ='(ref:mpg-plot)', fig.scap='Car engine size versus fuel efficiency',out.extra='',fig.align='center',cache=TRUE,warning=FALSE,fig.pos="H"}
+ggplot(data = mpg) + 
+  geom_point(mapping = aes(x = displ, y = hwy, color = class))
+```
\ No newline at end of file

04-results-02.Rmd

+# Results {#results-2}
+
+Second results chapter. Here's a reference: [@abe2009].
+
+```{r mpg-table, echo=FALSE, cache=TRUE}
+kable(head(mpg[, 1:8], 10), "latex", caption = "A table of the first 10 rows of the mpg data set", booktabs = T) %>%
+kable_styling(latex_options = c("hold_position"))
+```
\ No newline at end of file

05-discussion.Rmd

+# Discussion {#discussion}
+
+Discussion chapter.
\ No newline at end of file

20-appendix-a.Rmd

+# Appendix A {-}
+
+First appendix

21-appendix-b.Rmd

+# Appendix B {-}
+
+Second appendix 
\ No newline at end of file

99-references.Rmd

+# References {-}
+

_bookdown.yml

+book_filename: "thesis-dissertaion" # Change this to the actual title
+delete_merged_file: true
+rmd_files: ["index.Rmd","00-preface.Rmd", "01-intro.Rmd","02-methods.Rmd", "03-results-01.Rmd", "04-results-02.Rmd","05-discussion.Rmd", "appendix.Rmd","20-appendix-a.Rmd","21-appendix-b.Rmd", "99-references.Rmd"]
+language:
+  ui:
+    chapter_name: "Chapter "
+    
+

_bookdown_files/thesis-dissertaion_cache/epub3/__packages

+base
+tidyverse
+ggplot2
+tibble
+tidyr
+readr
+purrr
+dplyr
+stringr
+forcats
+kableExtra