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Created with Raphaël 2.2.016May15129Apr231084329Mar28262521121110976127Feb262524232221201918171615137624Jan22211510815Nov131Oct18Apr(docs) update api docs61-feature-add-…61-feature-add-optional-backwards-mapping-for-consistency-with-older-versionCode Formatting(feat) phen map flag to reverse translation(fix) pytest test_diff() not configured correcty, with right old phen directorydevdevMerge branch '60-tests-fail-after-merge-of-57' into 'dev'(fix) diff tests where not configured correctly, with the right old phen directoryMerge branch '57-fix-convertion-of-meldb-sail-phenotypes-to-acmc-0-1-12' into 'dev'(feat) flag no metadata in phen map output(feat) flag do not translate in phen map(feat) flag to stop phen diff from check config.yml if it doesn't exist(bug) phen.py code_errors mask cannot be None(bug) parse.py unknown check_regex param(bug) parse.py "read3" column named "Read3"metadata config schema(fix) Add metadata dict values for each concept set(fix) fixed diff so it works with list of paths rather than a single file. Merged dev into 57 branch to keep it up with the latest changes. Removed copy from a test which was from the previous implementation of diff. All tests pass. #57Merge branch 'dev' into 57-fix-convertion-of-meldb-sail-phenotypes-to-acmc-0-1-12(docs) updates to api documentationAllow multiple files per concept set - update yaml examplesAllow multiple files per concept set - update map functionRemove metadata processing from map functionAllow multiple files per concept set - loop over map functionAllow multiple files per concept set - validation passedAllow mulitple files per concept set - Typing ValidationMerge branch 'dev' of https://git.soton.ac.uk/meldb/concepts-processing into dev(Docs) Simple Local workflow ExampleMerge branch '58-fix-remove-metadata-tag-from-examples' into 'dev'(fix) removed metadata from the examples, found bug in test_diff that included the previous copy code which caused the test to fail. Addresses issue found in #57. Closes #58remove test for duplicated concept-set namesMerge branch 'dev' into 'main'mainmain(docs) fixed config.yaml references in readme and docs(docs) fixed config.yaml references in readme and docsMerge branch 'dev' into 'main'UPdated version to 0.1.1Merge branch 'dev' into 'main'temporary removal of test assertion to check outputs in diffMerge branch 'dev' into 'main'Merge branch '56-fix-support-versions-with-v-prefix-on-forked-repos' into 'dev'(fix) versions now increment from tags with a v prefix but then continue without the v, e.g. if v1.2.1 is the latest tag and we increment the major version the next version will be 2.0.0. closes #56(fix) added twine to the development dependancies