Commits · be4942da5258c8ed6c293a9a5b71e97554bb316b · meldb / concepts-processing · GitLab

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Mar 11, 2025
- temporary removal of test assertion to check outputs in diff · 90106ca4
  mjbonifa authored 4 months ago
  
  90106ca4
- (docs) refactored docs. changed yaml to yaml extensions · 54204dd4
  mjbonifa authored 4 months ago
  
  54204dd4
Mar 07, 2025
- (feature) Added forking existing remote and publishing to a new repo. Needed... · 89912789
  mjbonifa authored 4 months ago
  89912789
Mar 06, 2025
- (refactor) Updated diff workflow to provide defaults and flexibility. Closes #48 · 2d2d2a60
  mjbonifa authored 4 months ago
  
  2d2d2a60
- (fix) Changed the versioning of phenotypes to semantic versioning using the... · 9df8d5d2
  mjbonifa authored 4 months ago
  9df8d5d2
- (refactor) Changed codes to concepts directory for alignment with OMOP. Closes #52 · 1e099555
  mjbonifa authored 4 months ago
  
  1e099555
Feb 27, 2025
- fix: added version message to publish · e6ab6fbc
  mjbonifa authored 4 months ago
  
  e6ab6fbc
Feb 26, 2025
- fix: added map definition to the config.yaml so that we know which maps are... · e549bf4b
  mjbonifa authored 4 months ago
  e549bf4b
- test: added tests for diff between config 1, 2, 3 in test_diff. Updated the... · ba8a7ccb
  mjbonifa authored 4 months ago
  ba8a7ccb
Feb 25, 2025
- test: add hatch run check to pyproject.toml to run all of the tools rather... · 2e58ef45
  mjbonifa authored 4 months ago
  2e58ef45
Feb 24, 2025
- started the precommit hook work, but seems more complex as it requires some... · 3a7d715c
  mjbonifa authored 4 months ago
  3a7d715c
- test: fixed tests as config1 and config2 needed updating with the latest config format. Closes #32 · d42cf541
  mjbonifa authored 4 months ago
  
  d42cf541
- refactor: converted all examples to yaml and added test for config2. Updated... · 78e6fcd6
  mjbonifa authored 4 months ago
  78e6fcd6
- refactor: converted all examples to yaml and added test for config2. Updated... · 9eca4250
  mjbonifa authored 4 months ago
  9eca4250
Feb 23, 2025
- test: run mypc to check types and add annotations. run black and reformatted... · 829bb6c2
  mjbonifa authored 4 months ago
  829bb6c2
Feb 21, 2025
- implemented first part of export to create the omop database refactoring setup... · 4cbcdfe5
  mjbonifa authored 4 months ago
  4cbcdfe5
Feb 20, 2025
- refactored process codes in phen, moved into a single function · 7bc070b1
  mjbonifa authored 5 months ago
  
  7bc070b1
- removed the translate flag from teh phen code, not necessary and made the... · e7c14011
  mjbonifa authored 5 months ago
  e7c14011
Feb 19, 2025
- fixed state but between test and running from the command line · 75615a67
  mjbonifa authored 5 months ago
  
  75615a67
- removed -verify from option as always should be doing this and added some... · ab787128
  mjbonifa authored 5 months ago
  ab787128
Feb 18, 2025
- refactored files into the module acmc and sorted all the imports · 5e1fdfc4
  mjbonifa authored 5 months ago
  
  5e1fdfc4
- changed acmc.py to main.py, convention for cli tool · 62c283c7
  mjbonifa authored 5 months ago
  
  62c283c7
- changed all print statements for logging, and configured the default level... · 7de89272
  mjbonifa authored 5 months ago
  7de89272
- added initial logging setup but not updated any of the print statements yet as... · dbb536f0
  mjbonifa authored 5 months ago
  dbb536f0
- added initial pytests for basic workflow · 767dfd1c
  mjbonifa authored 5 months ago
  
  767dfd1c