Commits · 9c72a9b39dff32617502a03e7fbf6918b5941dfb · meldb / concepts-processing

Feb 15, 2025
- added acmc command line wrapper for entire toolkit moving parameter passing... · 9c72a9b3
  mjbonifa authored 4 months ago
  9c72a9b3
Feb 13, 2025
- changed directory checks for this script to focus on maps directory and not... · 33134b3e
  mjbonifa authored 4 months ago
  33134b3e
- updated mjb conda nad tested it can recreate the env · 38716126
  mjbonifa authored 4 months ago
  
  38716126
- renamed trud_api.py to trud.py; fixed error for r3->snomed as missed the file path · 47aeae38
  mjbonifa authored 4 months ago
  
  47aeae38
- added temporary conda environment · 83694229
  mjbonifa authored 4 months ago
  
  83694229
- updated readme; updated handling of build directories as these were not created automatically · b613e078
  mjbonifa authored 4 months ago
  
  b613e078
Feb 06, 2025
- Update README · d6a686c1
  Jakub Dylag authored 4 months ago
  
  d6a686c1
- move summary excel into json config · 8f8b5119
  Jakub Dylag authored 4 months ago
  
  8f8b5119
Jan 24, 2025
- rename JSON "meldb_phenotypes" -> "concept_set" · 28f44a19
  Jakub Dylag authored 4 months ago
  
  28f44a19
- Update README · bf5af2c1
  Jakub Dylag authored 4 months ago
  
  bf5af2c1
- Update README · 38fc682b
  Jakub Dylag authored 4 months ago
  
  38fc682b
Jan 22, 2025
- Export Conda Environment with Instructions · 55bbd31a
  Jakub Dylag authored 4 months ago
  
  55bbd31a
Jan 21, 2025
- Re-write README · 3876e7cd
  Jakub Dylag authored 4 months ago
  
  3876e7cd
- omop installation script · 5b98129c
  Jakub Dylag authored 4 months ago
  
  5b98129c
Jan 10, 2025
- rename error log columns, moved omop code definitions to parse.py · 850bd595
  Jakub Dylag authored 5 months ago
  
  850bd595
Jan 08, 2025
- Rename "code" -> "CONCEPT" and "MELDB_concept" -> "CONCEPT_SET" · 3c0f4c4a
  Jakub Dylag authored 5 months ago
  
  3c0f4c4a
- publish output to db · 4d8cbf8a
  Jakub Dylag authored 5 months ago
  
  4d8cbf8a
Nov 15, 2024
- Remove MELDB External source files · a4c7db06
  Jakub Dylag authored 7 months ago
  
  a4c7db06
Nov 01, 2024
- Auto Download and Extract TRUD Code Tables · 7389291c
  Jakub Dylag authored 7 months ago
  
  7389291c
Oct 31, 2024
- Summary Sheet to CSV and filepath in JSON file · 4929dd79
  Jakub Dylag authored 7 months ago
  
  4929dd79
- output reproducible - order and uniformity in output files · 12c11d66
  Jakub Dylag authored 7 months ago
  
  12c11d66
- Update README · 3ad40be1
  Jakub Dylag authored 7 months ago
  
  3ad40be1
- Move JSON concept mappings & defintions to concepts repo · c6eb56a7
  Jakub Dylag authored 7 months ago
  
  c6eb56a7
- update .gitignore · 188a59f9
  Jakub Dylag authored 7 months ago
  
  188a59f9
- create LICENCE · cfee3ec0
  Jakub Dylag authored 7 months ago
  
  cfee3ec0
Apr 18, 2024
- Updated README · b66f3d89
  Jakub Dylag authored 1 year ago
  
  b66f3d89
- convertion tables · b0e3147f
  Jakub Dylag authored 1 year ago
  
  b0e3147f
- init · 74a5e2b0
  Jakub Dylag authored 1 year ago
  
  74a5e2b0