Commits · 9254ae241f4a1cf334bc2c07f059a74efba7fd87 · meldb / concepts-processing · GitLab

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Mar 10, 2025
- (fix) fixed all typing and ready for documentation · 9254ae24
  mjbonifa authored 3 months ago
  
  9254ae24
Mar 09, 2025
- added pdocs document generation using the command hatch run docs. Creates html... · 3f1ca235
  mjbonifa authored 3 months ago
  3f1ca235
Feb 26, 2025
- fix: yaml library dump strips all quotes from the output and there's no... · 4b77e5d3
  mjbonifa authored 3 months ago
  4b77e5d3
Feb 25, 2025
- fix. removed contributing.md from mkdocs · 900c4949
  mjbonifa authored 3 months ago
  
  900c4949
- test: add hatch run check to pyproject.toml to run all of the tools rather... · 2e58ef45
  mjbonifa authored 3 months ago
  2e58ef45
Feb 23, 2025
- test: run mypc to check types and add annotations. run black and reformatted... · 829bb6c2
  mjbonifa authored 3 months ago
  829bb6c2
- refactor:trud and omop versions are now written in yaml format. When map is... · 08006e0c
  mjbonifa authored 3 months ago
  08006e0c
Feb 21, 2025
- refactord build directory. Moved trud and omop to a vocab directory. Moved... · e6fa6be4
  mjbonifa authored 3 months ago
  e6fa6be4
Feb 20, 2025
- added initial pyproject.toml and testing creating package without conda.yaml,... · f51e056a
  mjbonifa authored 3 months ago
  f51e056a
Feb 19, 2025
- Refactored base into logging; moved raise_ to raise_exception in parse as more... · 131f74ac
  mjbonifa authored 3 months ago
  131f74ac
Feb 18, 2025
- refactored files into the module acmc and sorted all the imports · 5e1fdfc4
  mjbonifa authored 3 months ago
  
  5e1fdfc4
- changed all print statements for logging, and configured the default level... · 7de89272
  mjbonifa authored 3 months ago
  7de89272
- added OMOP versioning · 28aecd75
  mjbonifa authored 3 months ago
  
  28aecd75
- shorted all the _code references removing _code as not needed and maps API and configuration easier · c87d1411
  mjbonifa authored 3 months ago
  
  c87d1411
- added ACMC_GITHUB_PAT and ACMC_GITLAB_PAT as environmnet variables and... · 43cba163
  mjbonifa authored 3 months ago
  43cba163
- moved trud api key to an environment variable; stored trud versions in file... · 43692665
  mjbonifa authored 3 months ago
  43692665
Feb 16, 2025
- refactored trud constants from MAPS to TRUD · c156c2d0
  mjbonifa authored 3 months ago
  
  c156c2d0
- refactored map to phen; refactored to standard directories for phenotypes that... · 95c3d5cf
  mjbonifa authored 3 months ago
  95c3d5cf
Feb 15, 2025
- changed trud map directory to trud to align with the naming convention used... · 24c5944e
  mjbonifa authored 4 months ago
  24c5944e
- added acmc command line wrapper for entire toolkit moving parameter passing... · 9c72a9b3
  mjbonifa authored 4 months ago
  9c72a9b3
Feb 13, 2025
- changed directory checks for this script to focus on maps directory and not... · 33134b3e
  mjbonifa authored 4 months ago
  33134b3e
- renamed trud_api.py to trud.py; fixed error for r3->snomed as missed the file path · 47aeae38
  mjbonifa authored 4 months ago
  
  47aeae38
- updated readme; updated handling of build directories as these were not created automatically · b613e078
  mjbonifa authored 4 months ago
  
  b613e078
Nov 01, 2024
- Auto Download and Extract TRUD Code Tables · 7389291c
  Jakub Dylag authored 7 months ago
  
  7389291c