Commits · 3f1ca235e5772d4573bd1b7c764416a1d37dc327 · meldb / concepts-processing · GitLab

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Mar 09, 2025
- added pdocs document generation using the command hatch run docs. Creates html... · 3f1ca235
  mjbonifa authored 4 months ago
  3f1ca235
Mar 06, 2025
- (refactor) Updated diff workflow to provide defaults and flexibility. Closes #48 · 2d2d2a60
  mjbonifa authored 4 months ago
  
  2d2d2a60
- (fix) removed export of sqlite_sequence. Closes #45 · 6421a3f5
  mjbonifa authored 4 months ago
  
  6421a3f5
Feb 27, 2025
- fix: moved omop export to concept-sets, moved concept set csv files to... · 7fdebb00
  mjbonifa authored 4 months ago
  7fdebb00
Feb 26, 2025
- fix: yaml library dump strips all quotes from the output and there's no... · 4b77e5d3
  mjbonifa authored 4 months ago
  4b77e5d3
- fix: added map definition to the config.yaml so that we know which maps are... · e549bf4b
  mjbonifa authored 4 months ago
  e549bf4b
- fix: added omop cdm version to the omop version file at 5.4. It's not clear... · 93226637
  mjbonifa authored 4 months ago
  93226637
- test: added tests for diff between config 1, 2, 3 in test_diff. Updated the... · ba8a7ccb
  mjbonifa authored 4 months ago
  ba8a7ccb
Feb 25, 2025
- fix: added not license requried against all omop vocabularies after check. #38 · 01b7bc43
  mjbonifa authored 4 months ago
  
  01b7bc43
- fix: double return in omop. Closes #38 · fa4af7fa
  mjbonifa authored 4 months ago
  
  fa4af7fa
Feb 23, 2025
- test: run mypc to check types and add annotations. run black and reformatted... · 829bb6c2
  mjbonifa authored 4 months ago
  829bb6c2
- refactor:trud and omop versions are now written in yaml format. When map is... · 08006e0c
  mjbonifa authored 4 months ago
  08006e0c
Feb 21, 2025
- not dumped all database tables to file on export so they can be versioned · aa86013b
  mjbonifa authored 5 months ago
  
  aa86013b
- implemented first part of export to create the omop database refactoring setup... · 4cbcdfe5
  mjbonifa authored 5 months ago
  4cbcdfe5
- updated readme and counts for omop table messages · ce37382e
  mjbonifa authored 5 months ago
  
  ce37382e
- added usage example to readme · ed81d814
  mjbonifa authored 5 months ago
  
  ed81d814
- refactord build directory. Moved trud and omop to a vocab directory. Moved... · e6fa6be4
  mjbonifa authored 5 months ago
  e6fa6be4
Feb 20, 2025
- added initial pyproject.toml and testing creating package without conda.yaml,... · f51e056a
  mjbonifa authored 5 months ago
  f51e056a
Feb 18, 2025
- refactored files into the module acmc and sorted all the imports · 5e1fdfc4
  mjbonifa authored 5 months ago
  
  5e1fdfc4
- changed all print statements for logging, and configured the default level... · 7de89272
  mjbonifa authored 5 months ago
  7de89272
- added OMOP versioning · 28aecd75
  mjbonifa authored 5 months ago
  
  28aecd75
Feb 16, 2025
- refactored map to phen; refactored to standard directories for phenotypes that... · 95c3d5cf
  mjbonifa authored 5 months ago
  95c3d5cf
Feb 15, 2025
- added example based on clinicalcodes.org, needs more work to demonstrate... · 3a6da0b8
  mjbonifa authored 5 months ago
  3a6da0b8
- changed trud map directory to trud to align with the naming convention used... · 24c5944e
  mjbonifa authored 5 months ago
  24c5944e
- added acmc command line wrapper for entire toolkit moving parameter passing... · 9c72a9b3
  mjbonifa authored 5 months ago
  9c72a9b3
Jan 21, 2025
- omop installation script · 5b98129c
  Jakub Dylag authored 6 months ago
  
  5b98129c