Commits · 18c4229ca498e6144320f8b2f0d511ea73a587f2 · meldb / concepts-processing · GitLab

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Feb 20, 2025
- made omop install directory option with default to working directory ./build/omop · 18c4229c
  mjbonifa authored 5 months ago
  
  18c4229c
- updated readme · 4541b584
  mjbonifa authored 5 months ago
  
  4541b584
- added initial pyproject.toml and testing creating package without conda.yaml,... · f51e056a
  mjbonifa authored 5 months ago
  f51e056a
- removed the translate flag from teh phen code, not necessary and made the... · e7c14011
  mjbonifa authored 5 months ago
  e7c14011
Feb 19, 2025
- Refactored base into logging; moved raise_ to raise_exception in parse as more... · 131f74ac
  mjbonifa authored 5 months ago
  131f74ac
Feb 18, 2025
- refactored files into the module acmc and sorted all the imports · 5e1fdfc4
  mjbonifa authored 5 months ago
  
  5e1fdfc4
- changed acmc.py to main.py, convention for cli tool · 74fe2c40
  mjbonifa authored 5 months ago
  
  74fe2c40
- changed all print statements for logging, and configured the default level... · 7de89272
  mjbonifa authored 5 months ago
  7de89272
- added initial logging setup but not updated any of the print statements yet as... · dbb536f0
  mjbonifa authored 5 months ago
  dbb536f0
- added OMOP versioning · 28aecd75
  mjbonifa authored 5 months ago
  
  28aecd75
- shorted all the _code references removing _code as not needed and maps API and configuration easier · c87d1411
  mjbonifa authored 5 months ago
  
  c87d1411
- moved trud api key to an environment variable; stored trud versions in file... · 43692665
  mjbonifa authored 5 months ago
  43692665
Feb 17, 2025
- added support for initialising from a remote repository · 0a65ea76
  mjbonifa authored 5 months ago
  
  0a65ea76
- added version control through a git repository; changed init to create the git... · e50447ea
  mjbonifa authored 5 months ago
  e50447ea
Feb 16, 2025
- added phen validate as a command to validate the configuration in a specified directory · 8c0be40f
  mjbonifa authored 5 months ago
  
  8c0be40f
- refactored map to phen; refactored to standard directories for phenotypes that... · 95c3d5cf
  mjbonifa authored 5 months ago
  95c3d5cf
Feb 15, 2025
- the _code suffix makes a difference to a lot of thigns, need to work that out · cb24de86
  mjbonifa authored 5 months ago
  
  cb24de86
- fixed default output and error files · 945ff7ca
  mjbonifa authored 5 months ago
  
  945ff7ca
- changed trud map directory to trud to align with the naming convention used... · 24c5944e
  mjbonifa authored 5 months ago
  24c5944e
- added acmc command line wrapper for entire toolkit moving parameter passing... · 9c72a9b3
  mjbonifa authored 5 months ago
  9c72a9b3