updated usage example to readme

README.md

@@ -136,7 +136,6 @@ Please execute the following process:
 	```bash
 	acmc omop install -f <path to downloaded OMOP zip file> -v <release version from email>
 	```
-Here's a well-structured **README.md** example with the series of steps you provided:
 
 ---
 
@@ -146,7 +145,7 @@ Follow these steps to initialize and manage a phenotype using `acmc`. In this ex
 
 1. **Initialize a phenotype in the workspace**
 
-Use the followijng acmc command to initialize the phenotype in a local Git repository:
+	Use the followijng `acmc` command to initialize the phenotype in a local Git repository:
 
 ```bash
 acmc phen init
@@ -154,7 +153,7 @@ acmc phen init
 
 2. **Copy example medical code lists to the phenotype codes directory**
 
-From the command prompt, copy medical code lists `/examples/codes`to the phenotype code directory:
+	From the command prompt, copy medical code lists `/examples/codes`to the phenotype code directory:
 
 ```bash
 cp -r ./examples/codes/* ./workspace/phen/codes
@@ -162,7 +161,7 @@ cp -r ./examples/codes/* ./workspace/phen/codes
 
 3. **Copy the example phenotype configuration file to the phenotype directory**
 
-From the command prompt, copy example phenotype configuration files `/examples/config.json` to the phenotype directory:
+	From the command prompt, copy example phenotype configuration files `/examples/config.json` to the phenotype directory:
 
 ```bash
 cp -r ./examples/config.json ./workspace/phen
@@ -170,7 +169,7 @@ cp -r ./examples/config.json ./workspace/phen
 
 4. **Validate the phenotype configuration**
 
-Use the followijng acmc command to validate the phenotype configuration to ensure it's correct:
+	Use the followijng `acmc` command to validate the phenotype configuration to ensure it's correct:
 
 ```bash
 acmc phen validate
@@ -178,7 +177,7 @@ acmc phen validate
 
 5. **Generate phenotype in read2 code format**
 
-Use the followijng acmc command to generate the phenotype in `read2` format:
+	Use the followijng `acmc` command to generate the phenotype in `read2` format:
 
 ```bash
 acmc phen map -t read2
@@ -186,7 +185,7 @@ acmc phen map -t read2
 
 6. **Publish phenotype at an initial version**
 
-Use the following `acmc` command to publish the phenotype at an initial version:
+	Use the following `acmc` command to publish the phenotype at an initial version:
 
 ```bash
 acmc phen publish
@@ -202,7 +201,7 @@ acmc phen map -t snomed
 
 8. **Get a copy of the previous version from the repo**
 
-Use the following `acmc` command to retrieve a copy of the previous version (`v1.0.3`) from the repository:
+	Use the following `acmc` command to retrieve a copy of the previous version (`v1.0.3`) from the repository:
 
 ```bash
 acmc phen copy -v v1.0.3
@@ -210,7 +209,7 @@ acmc phen copy -v v1.0.3
 
 9. **Compare the previous version `v1.0.3` with the latest version**
 
-Use the following `acmc` command to compare the previous version (`v1.0.3`) with the latest version in the repository:
+	Use the following `acmc` command to compare the previous version (`v1.0.3`) with the latest version in the repository:
 
 ```bash
 python acmc.py phen diff -old ./workspace/v1.0.3/
@@ -218,7 +217,7 @@ python acmc.py phen diff -old ./workspace/v1.0.3/
 
 10. **Publish the phenotype at the next version**
 
-Use the following `acmc` command to publish the phenotype at the next version:
+	Use the following `acmc` command to publish the phenotype at the next version:
 
 ```bash
 acmc phen publish