Merge branch 'dev' into 'main'

Dev

See merge request meldb/concepts-processing!43

README.md

@@ -189,7 +189,7 @@ cp -r ./examples/concepts/* ./workspace/phen/concepts
 	From the command prompt, copy example phenotype configuration files `/examples/config.json` to the phenotype directory:
 
 ```bash
-cp -r ./examples/config1.yaml ./workspace/phen/config.yaml
+cp -r ./examples/config1.yml ./workspace/phen/config.yml
 ```
 
    - You can view the configuarion file here [`config.json`](./examples/config.json) 

docs/index.md

@@ -71,13 +71,13 @@ workspace/                          # Default workspace directory
 │   │   ├── omop/                   # Processed phenotype concept sets in OMOP CDM database exported as CSV files
 │   ├── map/                        # Process mapping from source to target code types
 │   │   ├── errors/                 # Errors recorded during mapping process
-│   ├── config.yaml                 # Phenotype configuration file
-│   ├── vocab_versions.yaml         # Versions file for vocabularies used to generate concept sets
+│   ├── config.yml                 # Phenotype configuration file
+│   ├── vocab_versions.yml         # Versions file for vocabularies used to generate concept sets
 ``` 
 
 ### **Configuration File**
 
-Each phenotype is defined by configuration is stored in the root of the phenotype directory in `config.yaml`. The file is yaml format. 
+Each phenotype is defined by configuration is stored in the root of the phenotype directory in `config.yml`. The file is yaml format. 
 
 #### **Root Phenotype Element**  
 - `phenotype`: **(object)** The root element containing all phenotype-related concept sets and metadata.

pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "acmc"
-version = "0.1.1"
+version = "0.1.2"
 authors = [
     { name = "Jakub Dylag", email = "j.j.dylag@soton.ac.uk" },
     { name = "Michael Boniface", email = "m.j.boniface@soton.ac.uk" }