@@ -51,22 +51,25 @@ The tool supports verification and mapping across various diagnostic coding form
-**ATC Codes:** Maintained by WHO and used internationally for medication classification.
## Installation
1.**Setup Conda Enviroment:** Download and Install Python Enviroment. Follow insturctions to install minicoda from [https://docs.conda.io/en/latest/miniconda.html](https://docs.conda.io/en/latest/miniconda.html).
- Run the following command to recreate the environment: `conda env create -f conda.yaml`.
- Activate the environment: `conda activate base`
1.**Sign Up:** Register at [NHS TRUD](https://isd.digital.nhs.uk/trud/user/guest/group/0/account/form) and accept the following licenses:
2.**Sign Up:** Register at [NHS TRUD](https://isd.digital.nhs.uk/trud/user/guest/group/0/account/form) and accept the following licenses:
2.**Obtain API Key:** Retrieve your API key from [NHS TRUD Account Management](https://isd.digital.nhs.uk/trud/users/authenticated/filters/0/account/manage).
3.**Obtain API Key:** Retrieve your API key from [NHS TRUD Account Management](https://isd.digital.nhs.uk/trud/users/authenticated/filters/0/account/manage).
3.**Install TRUD:** Download and Install NHS TRUD medical code resources.
4.**Install TRUD:** Download and Install NHS TRUD medical code resources.
Executing the script using the command: `python trud_api.py --key <API_KEY>`.
Processed tables will be saved as `.parquet` files in the `maps/processed/` directory.
-*Note: NHS TRUD defines one-way mappings and does <b>NOT ADVISE</b> reversing the mappings. If you still wish to reverse these into two-way mappings, duplicate the given `.parquet` table and reverse the filename (e.g. `read2_code_to_snomed_code.parquet` to `snomed_code_to_read2_code.parquet`)*
4.***Optional: Install OMOP Database:** Download and install OMOP vocabularies from [Athena OHDSI](https://athena.ohdsi.org/vocabulary/list).
5.***Optional: Install OMOP Database:** Download and install OMOP vocabularies from [Athena OHDSI](https://athena.ohdsi.org/vocabulary/list).
