Run scripts from command line

medcoder/main.py

@@ -291,8 +291,7 @@ def run_all(mapping_file, target_code_type,
 		error_df = error_df.sort_values(by=["SOURCE", "VOCABULARY", "CONCEPT"])
 		error_df.to_csv(log_errors_path, index=False)
 	
-
-if __name__ == '__main__':
+def main():
 	parser = argparse.ArgumentParser(description="Script preprocess code lists and to map to given concept/phenotype",
 									 formatter_class=argparse.ArgumentDefaultsHelpFormatter)
 	
@@ -333,3 +332,7 @@ if __name__ == '__main__':
 		params["log_errors_path"] = config["error_log"]
 
 	run_all(**params)
+
+
+if __name__ == '__main__':
+	main()
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pyproject.toml

@@ -13,3 +13,8 @@ dependencies = [
     "pandas",
     "numpy"
 ]
+
+[project.scripts]
+medcoder = "medcoder.main:main"
+medcoder_install_trud = "medcoder.trud_api:main"
+medcoder_install_omop = "medcoder.omop_api:main"
\ No newline at end of file