Commit 34f5abf4 authored 2 months ago by mjbonifa

Merge branch '52-refactor-change-code-dir-to-concept-for-omop-alignment' into 'dev'

(refactor) Changed codes to concepts directory for alignment with OMOP. Closes #52

Closes #52

See merge request meldb/concepts-processing!27

parents a4172529 1e099555

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acmc/phen.py 8 additions, 8 deletions

acmc/phen.py
examples/concepts/clinical-codes-org/Cardiovascular events (ICD10)/Where this code list comes from .docx 0 additions, 0 deletions

...ular events (ICD10)/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Cardiovascular events (ICD10)/res52-cardiovascular-events-icd10.csv 0 additions, 0 deletions

...ular events (ICD10)/res52-cardiovascular-events-icd10.csv
examples/concepts/clinical-codes-org/Non-attendance codes/Where this code list comes from .docx 0 additions, 0 deletions

...on-attendance codes/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Non-attendance codes/res201-did-not-attend-appointment.csv 0 additions, 0 deletions

...on-attendance codes/res201-did-not-attend-appointment.csv
examples/concepts/clinical-codes-org/Symptom code lists/Abdominal pain/Where this code list comes from .docx 0 additions, 0 deletions

...ists/Abdominal pain/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Abdominal pain/res176-abdominal-pain.csv 0 additions, 0 deletions

...mptom code lists/Abdominal pain/res176-abdominal-pain.csv
examples/concepts/clinical-codes-org/Symptom code lists/Falls/Where this code list comes from .docx 0 additions, 0 deletions

...om code lists/Falls/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Falls/res178-fall.csv 0 additions, 0 deletions

...inical-codes-org/Symptom code lists/Falls/res178-fall.csv
examples/concepts/clinical-codes-org/Symptom code lists/Falls/res202-falls-outcome.csv 0 additions, 0 deletions

...des-org/Symptom code lists/Falls/res202-falls-outcome.csv
examples/concepts/clinical-codes-org/Symptom code lists/Fatigue/Where this code list comes from .docx 0 additions, 0 deletions

... code lists/Fatigue/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Fatigue/res175-fatigue.csv 0 additions, 0 deletions

...l-codes-org/Symptom code lists/Fatigue/res175-fatigue.csv
examples/concepts/clinical-codes-org/Symptom code lists/Headache/Where this code list comes from .docx 0 additions, 0 deletions

...code lists/Headache/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Headache/res175-headache.csv 0 additions, 0 deletions

...codes-org/Symptom code lists/Headache/res175-headache.csv
examples/concepts/clinical-codes-org/Symptom code lists/Incontinence/Where this code list comes from .docx 0 additions, 0 deletions

... lists/Incontinence/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Incontinence/res11-incontinence.csv 0 additions, 0 deletions

...rg/Symptom code lists/Incontinence/res11-incontinence.csv
examples/concepts/clinical-codes-org/Symptom code lists/Musculoskeletal pain/Where this code list comes from .docx 0 additions, 0 deletions

...usculoskeletal pain/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Musculoskeletal pain/res175-msk-pain.csv 0 additions, 0 deletions

...mptom code lists/Musculoskeletal pain/res175-msk-pain.csv
examples/concepts/clinical-codes-org/Symptom code lists/Neuropathic pain/Where this code list comes from .docx 0 additions, 0 deletions

...ts/Neuropathic pain/Where this code list comes from .docx
examples/concepts/clinical-codes-org/Symptom code lists/Neuropathic pain/res55-neuropathic_pain.csv 0 additions, 0 deletions

...om code lists/Neuropathic pain/res55-neuropathic_pain.csv

with 8 additions and 8 deletions

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