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added a bib file. See the Rmd files for how it works; contains all the R... 

added a bib file. See the Rmd files for how it works; contains all the R package refs we use. It's good practice to cite these in your code so that package authors get credit.
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##############
# R packages
@Manual{baseR,
title = {R: A Language and Environment for Statistical Computing},
author = {{R Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
year = {2016},
url = {https://www.R-project.org/},
}
@Manual{bookdown,
title = {bookdown: Authoring Books and Technical Documents with R Markdown},
author = {Yihui Xie},
year = {2018},
note = {R package version 0.9},
url = {https://github.com/rstudio/bookdown},
}
@Manual{broom,
title = {broom: Convert Statistical Analysis Objects into Tidy Data Frames},
author = {David Robinson},
year = {2016},
note = {R package version 0.4.1},
url = {https://CRAN.R-project.org/package=broom},
}
@Book{car,
title = {An {R} Companion to Applied Regression},
edition = {Second},
author = {John Fox and Sanford Weisberg},
year = {2011},
publisher = {Sage},
address = {Thousand Oaks {CA}},
url = {http://socserv.socsci.mcmaster.ca/jfox/Books/Companion},
}
@Manual{data.table,
title = {data.table: Extension of Data.frame},
author = {M Dowle and A Srinivasan and T Short and S Lianoglou with contributions from R Saporta and E Antonyan},
year = {2015},
note = {R package version 1.9.6},
url = {https://CRAN.R-project.org/package=data.table},
}
@Manual{doBy,
title = {doBy: Groupwise Statistics, LSmeans, Linear Contrasts, Utilities},
author = {Søren Højsgaard and Ulrich Halekoh},
year = {2016},
note = {R package version 4.5-15},
url = {https://CRAN.R-project.org/package=doBy},
}
@Manual{dplyr,
title = {dplyr: A Grammar of Data Manipulation},
author = {Hadley Wickham and Romain Francois},
year = {2016},
note = {R package version 0.5.0},
url = {https://CRAN.R-project.org/package=dplyr},
}
@Article{drake,
title = {The drake R package: a pipeline toolkit for reproducibility and high-performance computing},
author = {William Michael Landau},
journal = {Journal of Open Source Software},
year = {2018},
volume = {3},
number = {21},
url = {https://doi.org/10.21105/joss.00550},
}
@Manual{dtplyr,
title = {dtplyr: Data Table Back-End for 'dplyr'},
author = {Hadley Wickham},
year = {2016},
note = {R package version 0.0.1},
url = {https://CRAN.R-project.org/package=dtplyr},
}
@Manual{fgarch,
title = {fGarch: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling},
author = {Diethelm Wuertz and Yohan Chalabi with contribution from Michal Miklovic and Chris Boudt and Pierre Chausse and {others}},
year = {2016},
note = {R package version 3010.82.1},
url = {https://CRAN.R-project.org/package=fGarch},
}
@Manual{foreign,
title = {foreign: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...},
author = {{R Core Team}},
year = {2015},
note = {R package version 0.8-66},
url = {https://CRAN.R-project.org/package=foreign},
}
@Book{fox_car,
title = {An {R} Companion to Applied Regression},
edition = {Second},
author = {John Fox and Sanford Weisberg},
year = {2011},
publisher = {Sage},
address = {Thousand Oaks {CA}},
url = {http://socserv.socsci.mcmaster.ca/jfox/Books/Companion},
}
@Manual{gdata,
title = {gdata: Various R Programming Tools for Data Manipulation},
author = {Gregory R. Warnes and Ben Bolker and Gregor Gorjanc and Gabor Grothendieck and Ales Korosec and Thomas Lumley and Don MacQueen and Arni Magnusson and Jim Rogers and {others}},
year = {2015},
note = {R package version 2.17.0},
url = {https://CRAN.R-project.org/package=gdata},
}
@Manual{ggjoy,
title = {ggjoy: Joyplots in ggplot2},
author = {Claus O. Wilke},
year = {2017},
note = {R package version 0.1},
url = {https://github.com/clauswilke/ggjoy},
}
@Book{ggplot2,
author = {Hadley Wickham},
title = {ggplot2: Elegant Graphics for Data Analysis},
publisher = {Springer-Verlag New York},
year = {2009},
isbn = {978-0-387-98140-6},
url = {http://ggplot2.org},
}
@Article{ggmap,
author = {David Kahle and Hadley Wickham},
title = {ggmap: Spatial Visualization with ggplot2},
journal = {The R Journal},
year = {2013},
volume = {5},
number = {1},
pages = {144--161},
url = {http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf},
}
@Manual{gridExtra,
title = {gridExtra: Miscellaneous Functions for "Grid" Graphics},
author = {Baptiste Auguie},
year = {2016},
note = {R package version 2.2.1},
url = {https://CRAN.R-project.org/package=gridExtra},
}
@Manual{here,
title = {here: A Simpler Way to Find Your Files},
author = {Kirill Müller},
year = {2017},
note = {R package version 0.1},
url = {https://CRAN.R-project.org/package=here},
}
@Manual{Hmisc,
title = {Hmisc: Harrell Miscellaneous},
author = {Frank E {Harrell Jr} and with contributions from Charles Dupont and many others.},
year = {2016},
note = {R package version 3.17-4},
url = {https://CRAN.R-project.org/package=Hmisc},
}
@Manual{kableExtra,
title = {kableExtra: Construct Complex Table with 'kable' and Pipe Syntax},
author = {Hao Zhu},
year = {2019},
note = {R package version 1.0.1},
url = {https://CRAN.R-project.org/package=kableExtra},
}
@Manual{knitr,
title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
author = {Yihui Xie},
year = {2016},
url = {https://CRAN.R-project.org/package=knitr},
}
@Article{lmtest,
title = {Diagnostic Checking in Regression Relationships},
author = {Achim Zeileis and Torsten Hothorn},
journal = {R News},
year = {2002},
volume = {2},
number = {3},
pages = {7--10},
url = {https://CRAN.R-project.org/doc/Rnews/},
}
@Article{lubridate,
title = {Dates and Times Made Easy with {lubridate}},
author = {Garrett Grolemund and Hadley Wickham},
journal = {Journal of Statistical Software},
year = {2011},
volume = {40},
number = {3},
pages = {1--25},
url = {http://www.jstatsoft.org/v40/i03/},
}
@Manual{mapproj,
title = {mapproj: Map Projections},
author = {Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P Minka and transition to Plan 9 codebase by Roger Bivand.},
year = {2015},
note = {R package version 1.2-4},
url = {https://CRAN.R-project.org/package=mapproj},
}
@Manual{maptools,
title = {maptools: Tools for Reading and Handling Spatial Objects},
author = {Roger Bivand and Nicholas Lewin-Koh},
year = {2016},
note = {R package version 0.8-39},
url = {https://CRAN.R-project.org/package=maptools},
}
@Article{mefa,
title = {Processing Ecological Data in {R} with the {mefa} Package},
author = {P\'eter S\'olymos},
journal = {Journal of Statistical Software},
year = {2009},
volume = {29},
number = {8},
pages = {1--28},
url = {http://www.jstatsoft.org/v29/i08/},
}
@Article{openair,
title = {openair --- An R package for air quality data analysis},
author = {David C. Carslaw and Karl Ropkins},
journal = {Environmental Modelling & Software},
volume = {27--28},
number = {0},
pages = {52--61},
year = {2012},
issn = {1364-8152},
doi = {10.1016/j.envsoft.2011.09.008},
}
@Article{plm,
title = {Panel Data Econometrics in {R}: The {plm} Package},
author = {Yves Croissant and Giovanni Millo},
journal = {Journal of Statistical Software},
year = {2008},
volume = {27},
number = {2},
url = {http://www.jstatsoft.org/v27/i02/},
}
@Manual{plotly,
title = {plotly: Create Interactive Web Graphics via 'plotly.js'},
author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy},
year = {2016},
note = {R package version 4.5.6},
url = {https://CRAN.R-project.org/package=plotly},
}
@Article{plyr,
title = {The Split-Apply-Combine Strategy for Data Analysis},
author = {Hadley Wickham},
journal = {Journal of Statistical Software},
year = {2011},
volume = {40},
number = {1},
pages = {1--29},
url = {http://www.jstatsoft.org/v40/i01/},
}
@Manual{readr,
title = {readr: Read Tabular Data},
author = {Hadley Wickham and Jim Hester and Romain Francois},
year = {2016},
note = {R package version 1.0.0},
url = {https://CRAN.R-project.org/package=readr},
}
@Manual{readxl,
title = {readxl: Read Excel Files},
author = {Hadley Wickham and Jennifer Bryan},
year = {2017},
note = {R package version 1.0.0},
url = {https://CRAN.R-project.org/package=readxl},
}
@Article{reshape2,
title = {Reshaping Data with the {reshape} Package},
author = {Hadley Wickham},
journal = {Journal of Statistical Software},
year = {2007},
volume = {21},
number = {12},
pages = {1--20},
url = {http://www.jstatsoft.org/v21/i12/},
}
@Manual{rio,
title = {rio: A Swiss-army knife for data file I/O},
author = {Chung-hong Chan and Geoffrey CH Chan and Thomas J. Leeper and Jason Becker},
year = {2016},
note = {R package version 0.4.16},
}
@Manual{rmarkdown,
title = {rmarkdown: Dynamic Documents for R},
author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone},
year = {2020},
note = {R package version 2.1},
url = {https://github.com/rstudio/rmarkdown},
}
@Book{rmarkdownBook,
title = {R Markdown: The Definitive Guide},
author = {Yihui Xie and J.J. Allaire and Garrett Grolemund},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton, Florida},
year = {2018},
note = {ISBN 9781138359338},
url = {https://bookdown.org/yihui/rmarkdown},
}
@Manual{rtweet,
title = {rtweet: Collecting Twitter Data},
author = {Michael W. Kearney},
year = {2018},
note = {R package version 0.6.7},
url = {https://cran.r-project.org/package=rtweet},
}
@Article{sandwich,
title = {Object-Oriented Computation of Sandwich Estimators},
author = {Achim Zeileis},
journal = {Journal of Statistical Software},
year = {2006},
volume = {16},
number = {9},
pages = {1--16},
url = {http://www.jstatsoft.org/v16/i09/.},
}
@Manual{rgdal,
title = {rgdal: Bindings for the Geospatial Data Abstraction Library},
author = {Roger Bivand and Tim Keitt and Barry Rowlingson},
year = {2016},
note = {R package version 1.1-10},
url = {https://CRAN.R-project.org/package=rgdal},
}
@Manual{rgeos,
title = {rgeos: Interface to Geometry Engine - Open Source (GEOS)},
author = {Roger Bivand and Colin Rundel},
year = {2016},
note = {R package version 0.3-19},
url = {https://CRAN.R-project.org/package=rgeos},
}
@Manual{skimr,
title = {skimr: skimr},
author = {Eduardo {Arino de la Rubia} and Hao Zhu and Shannon Ellis and Elin Waring and Michael Quinn},
year = {2017},
note = {R package version 1.0},
url = {https://github.com/ropenscilabs/skimr},
}
@Manual{stringr,
title = {stringr: Simple, Consistent Wrappers for Common String Operations},
author = {Hadley Wickham},
year = {2016},
note = {R package version 1.1.0},
url = {https://CRAN.R-project.org/package=stringr},
}
@Manual{@sparklyr,
title = {sparklyr: R Interface to Apache Spark},
author = {Javier Luraschi and Kevin Ushey and JJ Allaire and {The Apache Software Foundation}},
year = {2016},
note = {R package version 0.4},
url = {https://CRAN.R-project.org/package=sparklyr},
}
@Manual{stargazer,
title = {stargazer: Well-Formatted Regression and Summary Statistics Tables},
author = {Marek Hlavac},
year = {2015},
note = {R package version 5.2},
organization = {Harvard University},
address = {Cambridge, USA},
url = {http://CRAN.R-project.org/package=stargazer},
}
@article{survey,
title = {Analysis of complex survey samples},
volume = {9},
number = {1},
urldate = {}},
journal = {Journal of Statistical Software},
author = {Lumley, T},
pages = {1-19}
}
@Manual{tables,
title = {tables: Formula-Driven Table Generation},
author = {Duncan Murdoch},
year = {2017},
note = {R package version 0.8},
url = {https://CRAN.R-project.org/package=tables},
}
@Manual{tidyverse,
title = {tidyverse: Easily Install and Load 'Tidyverse' Packages},
author = {Hadley Wickham},
year = {2017},
note = {R package version 1.1.1},
url = {https://CRAN.R-project.org/package=tidyverse},
}
@Manual{twitteR,
title = {twitteR: R Based Twitter Client},
author = {Jeff Gentry},
note = {R package version 1.1.9},
url = {http://lists.hexdump.org/listinfo.cgi/twitter-users-hexdump.org},
}
@Manual{viridis,
title = {viridis: Default Color Maps from 'matplotlib'},
author = {Simon Garnier},
year = {2018},
note = {R package version 0.5.1},
url = {https://CRAN.R-project.org/package=viridis},
}
@Manual{xlsx,
title = {xlsx: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files},
author = {Adrian A. Dragulescu},
year = {2014},
note = {R package version 0.5.7},
url = {https://CRAN.R-project.org/package=xlsx},
}
@article{zoo,
title = {zoo: S3 Infrastructure for Regular and Irregular Time Series},
author = {Achim Zeileis and Gabor Grothendieck},
journal = {Journal of Statistical Software},
year = {2005},
volume = {14},
number = {6},
pages = {1--27},
doi = {10.18637/jss.v014.i06},
}
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