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4.3.1 - Redesign GUI and remove .bat dependencies and GDP 4.3.3 - Delete Temporary Files On Main Pipeline Run on new GUI.py

Merged 4.3.1 - Redesign GUI and remove .bat dependencies and GDP 4.3.3 - Delete Temporary Files On Main Pipeline Run on new GUI.py
4.3.1 into master
Merged mhby1g21 requested to merge 4.3.1 into master
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