removed bib as pandoc failing; switched to using setup & loading functions; added about etc code

dataProcessing/nzCensus2013Test.Rmd

@@ -11,20 +11,34 @@ output:
     toc: yes
     toc_depth: 2
     toc_float: yes
+#bibliography: "~/bibliography.bib"
 ---
 
 ```{r setup, include=FALSE}
+# change default
 knitr::opts_chunk$set(echo = TRUE)
 
-library(readr)
-library(data.table)
-library(skimr)
-library(ggplot2)
-library(plotly)
+# Log compile time:
+startTime <- proc.time()
 
-lParams <- list()
+library(spatialec)
 
-lParams$dataPath <- "~/Data/NZ_Census/data/csv/"
+myPackages <- c("readr", 
+              "data.table",
+              "skimr",
+              "ggplot2",
+              "plotly")
+
+spatialec::loadLibraries(myPackages)
+
+# Identify the root directory ----
+root <- spatialec::findParentDirectory("spatialec")
+
+# --- Project Settings ----
+source(paste0(root, "/_scripts/spatialecSettings.R"))   # loads knitr options & assigns file paths and loads system info
+
+# Print system information
+outputMessage("Running on", lParams$sysName, "with projLoc =", root)   # sysName is set in spatialecSettings.R
 ```
 
 # Report Purpose
@@ -138,10 +152,35 @@ kableExtra::kable(caption = "Districts & Cities",
                                 privDwellings2013 = `2013_Census_occupied_private_dwelling_type_Total_occupied_private_dwellings`)][order(districtsDT$codeInt)])
 ```
 
-# Codebooks
+# About
+
+```{r check runtime}
+t <- proc.time() - startTime
+
+elapsed <- t[[3]]
+```
+
+
+```{r genericAbout, child="../_includes/spatialecAbout.Rmd"}
+# generic about include
+```
+
+Analysis completed in `r elapsed` seconds ( `r round(elapsed/60,2)` minutes) using [knitr](https://cran.r-project.org/package=knitr) in [RStudio](http://www.rstudio.com) with `r R.version.string` running on `r R.version$platform`.
+
+ Additional R packages used in this report (`r myPackages`):
+ 
+ * readr - for data loading [@readr]
+ * Hmisc - for data summaries [@Hmisc]
+ * data.table - for fast data munching [@data.table]
+ * ggplot2 - for slick graphics [@ggplot2]
+ * knitr - to create this document [@knitr]
+
+# Annex: Codebooks
 
 ## Dwellings
 
 ```{r dwellingsCb}
 Hmisc::describe(nzCensusDwellingsDF)
 ```
+
+# References
\ No newline at end of file