switch to SERG repo

.gitignore

+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata

IMPETUS.Rproj

+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX

LICENSE

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+Public License instead of this License.
+

README.md

+# IMPETUS
+Code used to model consumer water demand under drought conditions as part of the NERC funded IMPETUS (Improving Predictions of Drought for User Decision-Making) project:
+ * [http://gotw.nerc.ac.uk/list_split.asp?awardref=NE%2FL010216%2F1](http://gotw.nerc.ac.uk/list_split.asp?awardref=NE%2FL010216%2F1)
+
+# Public materials:
+
+  * Code re-use: if you want to re-use any of the code, read the [license file](LICENSE)!
+  
+#YMMV
\ No newline at end of file

SPRGSurvey/IMPETUS_SPRG_Data_Tests.Rmd

+---
+title: "SPRG Survey data tests"
+author: Ben Anderson (b.anderson@soton.ac.uk/@dataknut) [Energy & Climate Change,
+  Faculty of Engineering & Environment, University of Southampton]
+date: 'Last run at: `r Sys.time()`'
+output:
+  html_document:
+    fig_caption: yes
+    keep_md: yes
+    number_sections: yes
+    toc: yes
+    toc_float: yes
+  pdf_document:
+    number_sections: yes
+    toc: yes
+    toc_depth: 3
+bibliography: ~/bibliography.bib
+---
+
+```{r knitrSetUp, include=FALSE}
+knitr::opts_chunk$set(echo = TRUE) # code in output
+knitr::opts_chunk$set(warning = FALSE)
+knitr::opts_chunk$set(message = FALSE)
+knitr::opts_chunk$set(fig_caption = TRUE)
+knitr::opts_chunk$set(tidy = TRUE)
+```
+
+```{r mySetUp}
+# Housekeeping ----
+rm(list=ls(all=TRUE)) # remove all objects from workspace
+
+# Set start time ----
+startTime <- Sys.time()
+
+# Functions ----
+source("../impetusFunctions.R") # assumes running the code within 15m folder
+
+# Load libraries ----
+# Use Luke's function to require/install/load
+lb_myRequiredPackages(c("data.table", # fast data munching
+                     "Hmisc", # capitalize
+                     "ggplot2", # for fancy graphs
+                     "readr", # for data input,
+                     "stringr", # for string manipulation
+                     "lubridate", # for date manipulation
+                     "parallel", # to speed things up (hopefully)
+                     "knitr" # for kable
+                     ),"http://cran.rstudio.com/")
+
+# Parameters ----
+# Do this here AFTER loading libraries
+source("../impetusParameters.R")
+
+```
+# Introduction
+
+Explore SPRG survey data...
+
+# Load data
+```{r loadSprgData}
+sprgDT <- as.data.table(read_csv(sfile))
+
+tables()
+```
+
+
+Household attribues that match to census variables:
+
+ * q2 - number of people
+ * nssec_1/_2 - HRP NS-SEC
+ * q2b_1 - HRP age
+ * q2c_1 - HRP gender
+ * q2d_1 - work status
+ * hh_structure_cs - couple or single
+ * hh_structure_children - number of children (Census = 0,1,2,3+)
+ * q2_short - number of occupants
+ * q13a/b/c - number of cars
+ * q54 - religion
+ * q55 - limiting long-term illness
+ * q61 - own or rent
+ * q62 - landlord
+ * q63 - type of property
+ * q64 - number of rooms
+
+There may be more - see questionnaire and also the codebook.
+
+# Explore data
+
+## Demographics etc
+
+## Appliances
+
+## Water using habits
+
+# About
+
+This work was supported by the NERC funded IMPETUS (Improving Predictions of Drought for User Decision-Making) project:
+
+ * http://gotw.nerc.ac.uk/list_split.asp?awardref=NE%2FL010216%2F1
+
+Analysis completed in: `r round(Sys.time() - startTime,2)` seconds using [knitr](https://cran.r-project.org/package=knitr) with `r R.version.string` running on `r R.version$platform`.
+
+R packages used:
+
+ * base R - for the basics [@baseR]
+ * data.table - for fast (big) data handling [@data.table]
+ * readr - fast data reading [@readr]
+ * ggplot2 - fast data reading [@ggplot2]
+ * stringr - for string manipulation [@stringr]
+ * lubridate - for date manipulation [@lubridate]
+ * knitr - to create this document [@knitr]
+ 
+# References
\ No newline at end of file

SPRGSurvey/IMPETUS_SPRG_Data_Tests.md

+# SPRG Survey data tests
+Ben Anderson (b.anderson@soton.ac.uk/@dataknut) [Energy & Climate Change, Faculty of Engineering & Environment, University of Southampton]  
+Last run at: `r Sys.time()`  
+
+
+
+
+```r
+# Housekeeping ----
+rm(list=ls(all=TRUE)) # remove all objects from workspace
+
+# Set start time ----
+startTime <- Sys.time()
+
+# Functions ----
+source("../impetusFunctions.R") # assumes running the code within 15m folder
+
+# Load libraries ----
+# Use Luke's function to require/install/load
+lb_myRequiredPackages(c("data.table", # fast data munching
+                     "Hmisc", # capitalize
+                     "ggplot2", # for fancy graphs
+                     "readr", # for data input,
+                     "stringr", # for string manipulation
+                     "lubridate", # for date manipulation
+                     "parallel", # to speed things up (hopefully)
+                     "knitr" # for kable
+                     ),"http://cran.rstudio.com/")
+
+# Parameters ----
+# Do this here AFTER loading libraries
+source("../impetusParameters.R")
+```
+# Introduction
+
+Explore SPRG survey data...
+
+# Load data
+
+```r
+sprgDT <- as.data.table(read_csv(sfile))
+
+tables()
+```
+
+```
+##      NAME    NROW NCOL MB
+## [1,] sprgDT 1,802  553  8
+##      COLS                                                                            
+## [1,] iobs,bmg_id,q2,q2b_1,q2c_1,q2d_1,q2a_2,q2b_2,q2c_2,q2d_2,q2a_3,q2b_3,q2c_3,q2d_3
+##      KEY
+## [1,]    
+## Total: 8MB
+```
+
+
+Household attribues that match to census variables:
+
+ * q2 - number of people
+ * nssec_1/_2 - HRP NS-SEC
+ * q2b_1 - HRP age
+ * q2c_1 - HRP gender
+ * q2d_1 - work status
+ * hh_structure_cs - couple or single
+ * hh_structure_children - number of children (Census = 0,1,2,3+)
+ * q2_short - number of occupants
+ * q13a/b/c - number of cars
+ * q54 - religion
+ * q55 - limiting long-term illness
+ * q61 - own or rent
+ * q62 - landlord
+ * q63 - type of property
+ * q64 - number of rooms
+
+There may be more - see questionnaire and also the codebook.
+
+# Explore data
+
+## Demographics etc
+
+## Appliances
+
+## Water using habits
+
+# About
+
+This work was supported by the NERC funded IMPETUS (Improving Predictions of Drought for User Decision-Making) project:
+
+ * http://gotw.nerc.ac.uk/list_split.asp?awardref=NE%2FL010216%2F1
+
+Analysis completed in: 2.12 seconds using [knitr](https://cran.r-project.org/package=knitr) with R version 3.3.2 (2016-10-31) running on x86_64-apple-darwin13.4.0.
+
+R packages used:
+
+ * base R - for the basics [@baseR]
+ * data.table - for fast (big) data handling [@data.table]
+ * readr - fast data reading [@readr]
+ * ggplot2 - fast data reading [@ggplot2]
+ * stringr - for string manipulation [@stringr]
+ * lubridate - for date manipulation [@lubridate]
+ * knitr - to create this document [@knitr]
+ 
+# References

SPRGSurvey/README.md

+# IMPETUS
+Code used to model consumer water demand under drought conditions NERC funded IMPETUS (Improving Predictions of Drought for User Decision-Making) project:
+ * http://gotw.nerc.ac.uk/list_split.asp?awardref=NE%2FL010216%2F1
+
+## SPRG
+
+Analysis of the SRPG/ARCC-Water household water use survey (funded by EPSRC/ESRC and carried out by BMG Research under contract to University of Lancaster).
+
+See http://www.sprg.ac.uk/projects-fellowships/patterns-of-water/patterns-of-water-final-report for more information/reports on the original data.
+
+# Code re-use
+If you want to re-use any of the code, read the [license file](../LICENSE)!
\ No newline at end of file

_config.yml

+theme: jekyll-theme-slate
\ No newline at end of file

bookdown-demo-master/.gitignore

+.Rproj.user
+.Rhistory
+.RData
+_publish.R
+_book
+_bookdown_files
+rsconnect

bookdown-demo-master/.travis.yml

+language: r
+cache: packages
+
+env:
+  global:
+    - secure: "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"
+
+before_script:
+  - chmod +x ./_build.sh
+  - chmod +x ./_deploy.sh
+
+script:
+  - ./_build.sh
+  - ./_deploy.sh

bookdown-demo-master/01-intro.Rmd

+# Introduction {#intro}
+
+You can label chapter and section titles using `{#label}` after them, e.g., we can reference Chapter \@ref(intro). If you do not manually label them, there will be automatic labels anyway, e.g., Chapter \@ref(methods).
+
+Figures and tables with captions will be placed in `figure` and `table` environments, respectively.
+
+```{r nice-fig, fig.cap='Here is a nice figure!', out.width='80%', fig.asp=.75, fig.align='center'}
+par(mar = c(4, 4, .1, .1))
+plot(pressure, type = 'b', pch = 19)
+```
+
+Reference a figure by its code chunk label with the `fig:` prefix, e.g., see Figure \@ref(fig:nice-fig). Similarly, you can reference tables generated from `knitr::kable()`, e.g., see Table \@ref(tab:nice-tab).
+
+```{r nice-tab, tidy=FALSE}
+knitr::kable(
+  head(iris, 20), caption = 'Here is a nice table!',
+  booktabs = TRUE
+)
+```
+
+You can write citations, too. For example, we are using the **bookdown** package [@R-bookdown] in this sample book, which was built on top of R Markdown and **knitr** [@xie2015].

bookdown-demo-master/02-literature.Rmd

+# Literature
+
+Here is a review of existing methods.

bookdown-demo-master/03-method.Rmd

+# Methods
+
+We describe our methods in this chapter.

bookdown-demo-master/04-application.Rmd

+# Applications
+
+Some _significant_ applications are demonstrated in this chapter.
+
+## Example one
+
+## Example two

bookdown-demo-master/05-summary.Rmd

+# Final Words
+
+We have finished a nice book.

bookdown-demo-master/06-references.Rmd

+`r if (knitr:::is_html_output()) '# References {-}'`

bookdown-demo-master/DESCRIPTION

+Package: placeholder
+Title: Does not matter.
+Version: 0.0.1
+Imports: bookdown
+Remotes: rstudio/bookdown

bookdown-demo-master/LICENSE

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