config1.yaml

concept_sets:
  version: "v1.0.1"
  omop:
    vocabulary_id: "ACMC_Example"
    vocabulary_name: "ACMC example phenotype"
    vocabulary_reference: "https://git.soton.ac.uk/meldb/concepts-processing/-/tree/main/examples"
  concept_set:
    - concept_set_name: "ABDO_PAIN"
      concept_set_status: "AGREED"
      metadata: {}

codes:
  - folder: "clinical-codes-org"
    description: "Downloaded 16/11/23"
    files:
      - file: "Symptom code lists/Abdominal pain/res176-abdominal-pain.csv"
        columns:
          read2: "code"
          metadata:
            - "description"
        concept_set:
          - "ABDO_PAIN"