config2.yaml

concept_sets:
  version: "v1.0.4"
  omop:
    vocabulary_id: "ACMC_Example"
    vocabulary_name: "ACMC example phenotype"
    vocabulary_reference: "https://www.it-innovation.soton.ac.uk/projects/meldb/concept-processing/example"
  concept_set:
    - concept_set_name: "CVD_EVENTS"
      concept_set_status: "AGREED"
      metadata: {}
    - concept_set_name: "DID_NOT_ATTEND"
      concept_set_status: "AGREED"
      metadata: {}

codes:
  - folder: "clinical-codes-org"
    description: "Downloaded 16/11/23"
    files:
      - file: "Cardiovascular events (ICD10)/res52-cardiovascular-events-icd10.csv"
        columns:
          icd10: "code"
          metadata: []
        concept_set:
          - "CVD_EVENTS"
      - file: "Non-attendance codes/res201-did-not-attend-appointment.csv"
        columns:
          read2: "code"
          metadata: []
        concept_set:
          - "DID_NOT_ATTEND"