diff --git a/Refernces b/Project/Refernces
similarity index 100%
rename from Refernces
rename to Project/Refernces
diff --git a/Research Notes b/Project/Research Notes
similarity index 100%
rename from Research Notes
rename to Project/Research Notes
diff --git a/finalNotes.txt b/Project/finalNotes.txt
similarity index 100%
rename from finalNotes.txt
rename to Project/finalNotes.txt
diff --git a/README.md b/README.md
index 534d7061138d1e5d722ce16a8513ef7564a093d6..8b0591c11c4d99b370db0d1b503f84a3f3f7b331 100644
--- a/README.md
+++ b/README.md
@@ -3,25 +3,18 @@
 # Project title: A Security Analysis of the FbHash Approximate Matching Algorithm
 
 setup:  
-make sure that the following commands work on your computer: make, git  
+ensure make and git installed
 git clone https://git.soton.ac.uk/os4g18/comp3200-individualproject-os4g18.git  
 cd ./comp3200-individualproject-os4g18/  
-sudo make install  
-  
-download YARA  
-copy setup  
-move module  
-rest of setup  
-  
-to run FbHash,  
-move to FbHash folder, view readme in there  
-  
-to run YARA  
-move to FbHash folder, view readme in there  
-  
-weekly report notes  
-  
-  
+sudo make install
+(run make yara for YARA dependencies, make hash if you want ssdeep and sdhash dependencies)
+
+to run FbHash,
+sudo make install in root,
+move to FbHash folder,
+python3 fbHash.py --help to view command list
+or view makefile to see some basic commands
+
 ProjectGoalsCheckList:  
 * [X] All Citations
 * [X] Lookup safe malware proccessing
@@ -31,15 +24,13 @@ ProjectGoalsCheckList:
 * [X] Get Feedback for Interim
 * [X] Submitt Interim
 * [X] Implement FbHash
-* [ ] Implement YARA
 * [X] Gather Malware Set 
 * [X] Eval FbHash
-* [ ] Eval YARA
-* [ ] Perform experiment
+* [X] Perform experiment
 * [X] Update Citations
 * [X] Write Final
-* [ ] Get Feedback for Final
-* [ ] Submitt Final
+* [X] Refine Final
+* [X] Submit Final
 * [ ] Plan Viva
-* [ ] Get Feedback for Viva
+* [ ] Prepare Viva
 * [ ] Viva