diff --git a/PHEN_assign_v3.json b/PHEN_assign_v3.json
new file mode 100644
index 0000000000000000000000000000000000000000..413c0055f2b99cea8a6dd5c464c567159049c948
--- /dev/null
+++ b/PHEN_assign_v3.json
@@ -0,0 +1,3776 @@
+{
+ "concepts": {
+ "file":"PHEN_summary_working.csv",
+ "columns":{
+ "concept_name":"CONCEPT NAME ",
+ "concept_status":"AGREED",
+ "metadata":["CONCEPT TYPE"]
+ }
+ },
+ "codes":[
+ {
+ "folder":"codes/Medication code source",
+ "description":"Medication Codes - downloaded 15/12/23",
+ "files": [
+ {
+ "file":"WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx",
+ "excel_sheet":"in",
+ "columns":{
+ "read2_code":"READCODE",
+ "metadata":["DESCRIPTION",
+ "WILK_READCODE",
+ "DRUG_CATEGORY"]
+ },
+ "meldb_phenotypes": ["ALL_MEDICATIONS"]
+ },
+ {
+ "file":"Pain medications/Read_codes_for_pain_drugs_if_no_epilepsy_diagnosis.csv",
+ "columns":{
+ "read2_code":"readcode",
+ "atc_code":"atc_code"
+ },
+ "meldb_phenotypes": ["PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS"]
+ },
+ {
+ "file":"Pain medications/Read_codes_for_pain_drugs.csv",
+ "columns":{
+ "read2_code":"readcode"
+ },
+ "meldb_phenotypes": ["PAIN_MEDICATIONS"]
+ }
+ ]
+ },
+ {
+ "folder":"codes/ClinicalCodes.org from the University of Manchester",
+ "description":"Simon's Clinical codes - downloaded 16/11/23",
+ "files": [
+ {
+ "file":"Symptom code lists/Abdominal pain/res176-abdominal-pain.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ABDO_PAIN"]
+ },
+ {
+ "file":"Cardiovascular events (ICD10)/res52-cardiovascular-events-icd10.csv",
+ "columns":{
+ "icd10_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["CVD_EVENTS"]
+ },
+ {
+ "file":"Non-attendance codes/res201-did-not-attend-appointment.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DID_NOT_ATTEND"]
+ },
+ {
+ "file":"Symptom code lists/Falls/res178-fall.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["FALLS"]
+ },
+ {
+ "file":"Symptom code lists/Falls/res202-falls-outcome.csv",
+ "actions":{
+ "split_col":"coding_system",
+ "codes_col":"code"
+ },
+ "columns":{
+ "icd10_code":"ICD-10",
+ "cprd_code":"CPRD_product_code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["FALLS"]
+ },
+ {
+ "file":"Symptom code lists/Fatigue/res175-fatigue.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["FATIGUE"]
+ },
+ {
+ "file":"Symptom code lists/Headache/res175-headache.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["HEADACHE"]
+ },
+ {
+ "file":"Symptom code lists/Incontinence/res11-incontinence.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["INCONTINENCE"]
+ },
+ {
+ "file":"Motor neurone disease/phenotype_PH62_ver_124_concepts_20230719T112819.csv",
+ "actions":{
+ "split_col":"coding_system",
+ "codes_col":"code"
+ },
+ "columns":{
+ "read2_code":"Read codes v2",
+ "med_code":"Med codes",
+ "icd10_code":"ICD10 codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["MOTOR_NEURONE_DISEASE"]
+ },
+ {
+ "file":"Symptom code lists/Musculoskeletal pain/res175-msk-pain.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["MSK_PAIN"]
+ },
+ {
+ "file":"Symptom code lists/Neuropathic pain/res55-neuropathic_pain.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["NEUROPATH_PAIN"]
+ },
+ {
+ "file":"Obsessive Compulsive Disorder/phenotype_PH223_ver_446_concepts_20230719T114228.csv",
+ "actions":{
+ "split_col":"coding_system",
+ "codes_col":"code"
+ },
+ "columns":{
+ "read2_code":"Read codes v2",
+ "med_code":"Med codes",
+ "icd10_code":"ICD10 codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["OCD"]
+ },
+ {
+ "file":"Palliative care codes/res176-palliative-and-end-of-life-care.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["PALLIATIVE_CARE"]
+ },
+ {
+ "file":"Peptic ulcer/phenotype_PH1091_ver_2385_concepts_20230719T122902.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["PEPTIC_ULCER"]
+ },
+ {
+ "file":"Personality disorders/res38-personality-disorder.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["PERSONALITY_DISORDERS"]
+ },
+ {
+ "file":"Self harm/res41-self-harm.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SELF_HARM"]
+ },
+ {
+ "file":"Symptom code lists/Sleep problems/res175-sleep-problems.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SLEEP_PROBLEMS"]
+ },
+ {
+ "file":"Symptom code lists/Stress/res175-stress.csv",
+ "columns":{
+ "read2_code":"code",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["STRESS"]
+ },
+ {
+ "file":"Tuberculosis/phenotype_PH87_ver_174_concepts_20230719T113229.csv",
+ "actions":{
+ "split_col":"coding_system",
+ "codes_col":"code"
+ },
+ "columns":{
+ "read2_code":"Read codes v2",
+ "med_code":"Med codes",
+ "icd10_code":"ICD10 codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["TUBERCULOSIS"]
+ },
+ {
+ "file":"Urinary tract stones/phenotype_PH331_ver_662_concepts_20230719T121545.csv",
+ "actions":{
+ "split_col":"coding_system",
+ "codes_col":"code"
+ },
+ "columns":{
+ "read2_code":"Read codes v2",
+ "med_code":"Med codes",
+ "icd10_code":"ICD10 codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["URINARY_STONES"]
+ }
+ ]
+ },
+ {
+ "folder":"codes/Opencodelists",
+ "description":"Simon's Open Code Lists- downloaded 19/10/23",
+ "files": [
+ {
+ "file":"sickle_cell_disease.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "read3_code":"Read Code"
+ },
+ "meldb_phenotypes": ["SICKLE_CELL"]
+ },
+ {
+ "file":"SimonFraser-loneliness-5d0a1dad.csv",
+ "columns":{
+ "read3_code":"code"
+ },
+ "meldb_phenotypes": ["LONELINESS"]
+ },
+ {
+ "file":"SimonFraser-mobility-problems-174143fa.csv",
+ "columns":{
+ "read3_code":"code"
+ }
+ },
+ {
+ "file":"SimonFraser-obesity-3050b72f.csv",
+ "columns":{
+ "read3_code":"code"
+ },
+ "meldb_phenotypes": ["OBESITY"]
+ },
+ {
+ "file":"SimonFraser-divorce-and-separation-49602a64.csv",
+ "columns":{
+ "read3_code":"code"
+ },
+ "meldb_phenotypes": ["SEPARATION_DIVORCE"]
+ },
+ {
+ "file":"SimonFraser-unemployed-11dbc40e.csv",
+ "columns":{
+ "read3_code":"code"
+ },
+ "meldb_phenotypes": ["UNEMPLOYED"]
+ },
+ {
+ "file":"SimonFraser-work-change-43faaa78.csv",
+ "columns":{
+ "read3_code":"code"
+ },
+ "meldb_phenotypes": ["WORK_CHANGE"]
+ },
+ {
+ "file":"SNOMED_codes/SimonFraser-snomed-loneliness-4c12ea5a.csv",
+ "columns":{
+ "snomed_code":"code"
+ },
+ "meldb_phenotypes": ["LONELINESS"]
+ },
+ {
+ "file":"SNOMED_codes/SimonFraser-snomed-mobility-problems-33037725.csv",
+ "columns":{
+ "snomed_code":"code"
+ }
+ },
+ {
+ "file":"SNOMED_codes/SimonFraser-snomed-obesity-19f403f0.csv",
+ "columns":{
+ "snomed_code":"code"
+ },
+ "meldb_phenotypes": ["OBESITY"]
+ },
+ {
+ "file":"SNOMED_codes/SimonFraser-snomed-divorce-7e31d0c4.csv",
+ "columns":{
+ "snomed_code":"code"
+ },
+ "meldb_phenotypes": ["SEPARATION_DIVORCE"]
+ },
+ {
+ "file":"SNOMED_codes/SimonFraser-snomed-unemployed-00e490bb.csv",
+ "columns":{
+ "snomed_code":"code"
+ },
+ "meldb_phenotypes": ["UNEMPLOYED"]
+ },
+ {
+ "file":"SNOMED_codes/SimonFraser-snomed-work-change-67d51d85.csv",
+ "columns":{
+ "snomed_code":"code"
+ },
+ "meldb_phenotypes": ["WORK_CHANGE"]
+ },
+
+
+ {
+ "file":"ICD10_codes/ICD10 Dialysis_ SimonFraser-dialysis-3d6668b7 .csv",
+ "columns":{
+ "icd10_code":"code"
+ },
+ "meldb_phenotypes": ["DIALYSIS"]
+ },
+ {
+ "file":"ICD10_codes/ICD10 Sickle cellSimonFraser-icd10-sickle-cell-59289be2.csv",
+ "columns":{
+ "icd10_code":"code"
+ },
+ "meldb_phenotypes": ["SICKLE_CELL"]
+ },
+ {
+ "file":"ICD10_codes/ICD10 VTE_SimonFraser-icd10-venous-thromboembolism-0b47824d.csv",
+ "columns":{
+ "icd10_code":"code"
+ },
+ "meldb_phenotypes": ["VTD"]
+ },
+ {
+ "file":"ICD10_codes/ICD10_diabetic retinopathy_SimonFraser-icd10-diabetic-retinopathy-0dfa4243.csv",
+ "columns":{
+ "icd10_code":"code"
+ },
+ "meldb_phenotypes": ["DIABETIC_RETINOPATHY"]
+ },
+ {
+ "file":"ICD10_codes/ICD10_renal transplant_SimonFraser-icd10-renal-transplant-2456f582.csv",
+ "columns":{
+ "icd10_code":"code"
+ },
+ "meldb_phenotypes": ["RENAL_TRANSPLANT"]
+ },
+ {
+ "file":"ICD10_codes/ICD10_thalassaemia_SimonFraser-icd10-thalassaemia-401928ad.csv",
+ "columns":{
+ "icd10_code":"code"
+ },
+ "meldb_phenotypes": ["THALASSAEMIA"]
+ }
+ ]
+ },
+ {
+ "folder":"codes/hanlon",
+ "description":"Hanlon's Paper Code Lists",
+ "files": [
+ {
+ "file":"Read_codes_for_diagnoses.csv",
+ "actions":{
+ "divide_col": "MMCode"
+ },
+ "columns":{
+ "read2_code":"Read Code"
+ },
+ "meldb_phenotypes_categories":{
+ "13":["ANXIETY"],
+ "22":["ARRHYTHMIA"],
+ "5":["ASTHMA"],
+ "33":["BLINDNESS_AND_LOW_VISION"],
+ "37":["BRONCHIECSTASIS"],
+ "41":["CHRONIC_FATIGUE_SYNDROME"],
+ "34":["CHRONIC_SINUSITIS"],
+ "12":["COPD"],
+ "6":["CORONARY_HEART_DISEASE"],
+ "11":["DEAFNESS"],
+ "28":["DEMENTIA_ALZHEIMER"],
+ "3":["DEPRESSION"],
+ "21":["DIVERTICULAR_DISEASE"],
+ "16":["DRUG_ALCOHOL_MISUSE"],
+ "17":["DRUG_ALCOHOL_MISUSE"],
+ "36":["EATING_DISORDERS"],
+ "27":["EPILEPSY"],
+ "26":["GLAUCOMA"],
+ "24":["HF"],
+ "2":["HYPERTENSION"],
+ "31":["IBD"],
+ "14":["IBS"],
+ "35":["LEARNING_DISABILITY"],
+ "39":["MULTIPLE_SCLEROSIS"],
+ "38":["PARKINSONS"],
+ "25":["PROSTATE_DISORDERS"],
+ "23":["PVD"],
+ "19":["STROKE"],
+ "40":["VIRAL_HEPATITIS"]
+ }
+ }
+ ]
+ },
+ {
+ "folder":"codes/GitHub_TG_repository",
+ "description":"Ho's Paper Code Lists",
+ "files":[
+ {
+ "file":"ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"ADHD_mm_birm_cam/ADHD_mm_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"ADHD_mm_birm_cam/ADHD_mm_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ADDISONS_DISEASE"]
+ },
+ {
+ "file":"Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ADDISONS_DISEASE"]
+ },
+ {
+ "file":"Addison_Disease_birm_cam/Addison_Disease_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ADDISONS_DISEASE"]
+ },
+ {
+ "file":"Addison_Disease_birm_cam/Addison_Disease_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ADDISONS_DISEASE"]
+ },
+ {
+ "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANKYLOSING_SPONDYLITIS"]
+ },
+ {
+ "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANKYLOSING_SPONDYLITIS"]
+ },
+ {
+ "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANKYLOSING_SPONDYLITIS"]
+ },
+ {
+ "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANKYLOSING_SPONDYLITIS"]
+ },
+ {
+ "file":"Anxiety_birm_cam/Anxiety_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANXIETY"]
+ },
+ {
+ "file":"Anxiety_birm_cam/Anxiety_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANXIETY"]
+ },
+ {
+ "file":"Anxiety_birm_cam/Anxiety_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANXIETY"]
+ },
+ {
+ "file":"Anxiety_birm_cam/Anxiety_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANXIETY"]
+ },
+ {
+ "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANEURYSM"]
+ },
+ {
+ "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANEURYSM"]
+ },
+ {
+ "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANEURYSM"]
+ },
+ {
+ "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANEURYSM"]
+ },
+ {
+ "file":"Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ARRHYTHMIA"]
+ },
+ {
+ "file":"Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ARRHYTHMIA"]
+ },
+ {
+ "file":"Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ARRHYTHMIA"]
+ },
+ {
+ "file":"Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ARRHYTHMIA"]
+ },
+ {
+ "file":"Asthma_PUSHAsthma/Asthma_PUSHAsthma_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ASTHMA"]
+ },
+ {
+ "file":"Asthma_PUSHAsthma/Asthma_PUSHAsthma_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ASTHMA"]
+ },
+ {
+ "file":"Asthma_PUSHAsthma/Asthma_PUSHAsthma_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ASTHMA"]
+ },
+ {
+ "file":"Asthma_PUSHAsthma/Asthma_PUSHAsthma_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ASTHMA"]
+ },
+ {
+ "file":"AtopicEczema_birm_cam/AtopicEczema_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ATOPIC_ECZEMA"]
+ },
+ {
+ "file":"AtopicEczema_birm_cam/AtopicEczema_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ATOPIC_ECZEMA"]
+ },
+ {
+ "file":"AtopicEczema_birm_cam/AtopicEczema_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ATOPIC_ECZEMA"]
+ },
+ {
+ "file":"AtopicEczema_birm_cam/AtopicEczema_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ATOPIC_ECZEMA"]
+ },
+ {
+ "file":"Autism_birm_cam/Autism_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"Autism_birm_cam/Autism_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"Autism_birm_cam/Autism_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"Autism_birm_cam/Autism_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["AUTISM_AND_ADHD"]
+ },
+ {
+ "file":"Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"B12deficiency_birm_cam/B12deficiency_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"B12deficiency_birm_cam/B12deficiency_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"Benign Prostate Hyperplasia_birm_cam/Benign Prostate Hyperplasia_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PROSTATE_DISORDERS"]
+ },
+ {
+ "file":"Benign Prostate Hyperplasia_birm_cam/Benign Prostate Hyperplasia_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PROSTATE_DISORDERS"]
+ },
+ {
+ "file":"Benign Prostate Hyperplasia_birm_cam/Benign Prostate Hyperplasia_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PROSTATE_DISORDERS"]
+ },
+ {
+ "file":"Bipolar_birm_cam/Bipolar_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BIPOLAR_DISORDER"]
+ },
+ {
+ "file":"Bipolar_birm_cam/Bipolar_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BIPOLAR_DISORDER"]
+ },
+ {
+ "file":"Bipolar_birm_cam/Bipolar_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BIPOLAR_DISORDER"]
+ },
+ {
+ "file":"Bipolar_birm_cam/Bipolar_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BIPOLAR_DISORDER"]
+ },
+ {
+ "file":"BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BREAST_CANCER"]
+ },
+ {
+ "file":"BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BREAST_CANCER"]
+ },
+ {
+ "file":"BreastCancer_birm_cam/BreastCancer_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BREAST_CANCER"]
+ },
+ {
+ "file":"BreastCancer_birm_cam/BreastCancer_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BREAST_CANCER"]
+ },
+ {
+ "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BRONCHIECSTASIS"]
+ },
+ {
+ "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BRONCHIECSTASIS"]
+ },
+ {
+ "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BRONCHIECSTASIS"]
+ },
+ {
+ "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BRONCHIECSTASIS"]
+ },
+ {
+ "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CKD_STAGE3_5"]
+ },
+ {
+ "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CKD_STAGE3_5"]
+ },
+ {
+ "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CKD_STAGE3_5"]
+ },
+ {
+ "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CKD_STAGE3_5"]
+ },
+ {
+ "file":"COPD_birm_cam/COPD_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COPD "]
+ },
+ {
+ "file":"COPD_birm_cam/COPD_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COPD "]
+ },
+ {
+ "file":"COPD_birm_cam/COPD_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COPD "]
+ },
+ {
+ "file":"COPD_birm_cam/COPD_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COPD "]
+ },
+ {
+ "file":"ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_FATIGUE_SYNDROME"]
+ },
+ {
+ "file":"ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_FATIGUE_SYNDROME"]
+ },
+ {
+ "file":"ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_FATIGUE_SYNDROME"]
+ },
+ {
+ "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PANCREATIC_DISEASE"]
+ },
+ {
+ "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PANCREATIC_DISEASE"]
+ },
+ {
+ "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PANCREATIC_DISEASE"]
+ },
+ {
+ "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PANCREATIC_DISEASE"]
+ },
+ {
+ "file":"ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_SINUSITIS"]
+ },
+ {
+ "file":"ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_SINUSITIS"]
+ },
+ {
+ "file":"ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_SINUSITIS"]
+ },
+ {
+ "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_BACK_PAIN", "CHRONIC_PAIN"]
+ },
+ {
+ "file":"Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_BACK_PAIN", "CHRONIC_PAIN"]
+ },
+ {
+ "file":"Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_BACK_PAIN", "CHRONIC_PAIN"]
+ },
+ {
+ "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COELIAC_DISEASE"]
+ },
+ {
+ "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COELIAC_DISEASE"]
+ },
+ {
+ "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COELIAC_DISEASE"]
+ },
+ {
+ "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COELIAC_DISEASE"]
+ },
+ {
+ "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COLON_CANCER"]
+ },
+ {
+ "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COLON_CANCER"]
+ },
+ {
+ "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COLON_CANCER"]
+ },
+ {
+ "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["COLON_CANCER"]
+ },
+ {
+ "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_PAIN"]
+ },
+ {
+ "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_PAIN"]
+ },
+ {
+ "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_PAIN"]
+ },
+ {
+ "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_PAIN"]
+ },
+ {
+ "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ },
+ {
+ "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ },
+ {
+ "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ },
+ {
+ "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ },
+ {
+ "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CYSTIC_FIBROSIS"]
+ },
+ {
+ "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CYSTIC_FIBROSIS"]
+ },
+ {
+ "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CYSTIC_FIBROSIS"]
+ },
+ {
+ "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CYSTIC_FIBROSIS"]
+ },
+ {
+ "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEMENTIA_ALZHEIMER"]
+ },
+ {
+ "file":"Depression_birm_cam/Depression_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEPRESSION"]
+ },
+ {
+ "file":"Depression_birm_cam/Depression_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEPRESSION"]
+ },
+ {
+ "file":"Depression_birm_cam/Depression_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEPRESSION"]
+ },
+ {
+ "file":"Depression_birm_cam/Depression_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEPRESSION"]
+ },
+ {
+ "file":"Dialysis MM_birm_cam/Dialysis MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIALYSIS"]
+ },
+ {
+ "file":"Dialysis MM_birm_cam/Dialysis MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIALYSIS"]
+ },
+ {
+ "file":"Dialysis MM_birm_cam/Dialysis MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIALYSIS"]
+ },
+ {
+ "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EATING_DISORDERS"]
+ },
+ {
+ "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EATING_DISORDERS"]
+ },
+ {
+ "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EATING_DISORDERS"]
+ },
+ {
+ "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EATING_DISORDERS"]
+ },
+ {
+ "file":"EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EHLERS_DANLOS_SYNDROME"]
+ },
+ {
+ "file":"EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EHLERS_DANLOS_SYNDROME"]
+ },
+ {
+ "file":"EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EHLERS_DANLOS_SYNDROME"]
+ },
+ {
+ "file":"Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ENDOMETRIOSIS"]
+ },
+ {
+ "file":"Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ENDOMETRIOSIS"]
+ },
+ {
+ "file":"Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ENDOMETRIOSIS"]
+ },
+ {
+ "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EPILEPSY"]
+ },
+ {
+ "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EPILEPSY"]
+ },
+ {
+ "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EPILEPSY"]
+ },
+ {
+ "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["EPILEPSY"]
+ },
+ {
+ "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["FIBROMYALGIA"]
+ },
+ {
+ "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["FIBROMYALGIA"]
+ },
+ {
+ "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["FIBROMYALGIA"]
+ },
+ {
+ "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["FIBROMYALGIA"]
+ },
+ {
+ "file":"Folate deficiency_birm_cam/Folate deficiency_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"Folate deficiency_birm_cam/Folate deficiency_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"Folate deficiency_birm_cam/Folate deficiency_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GLAUCOMA"]
+ },
+ {
+ "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GLAUCOMA"]
+ },
+ {
+ "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GLAUCOMA"]
+ },
+ {
+ "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GLAUCOMA"]
+ },
+ {
+ "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GOUT"]
+ },
+ {
+ "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GOUT"]
+ },
+ {
+ "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GOUT"]
+ },
+ {
+ "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["GOUT"]
+ },
+ {
+ "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HF"]
+ },
+ {
+ "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HF"]
+ },
+ {
+ "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HF"]
+ },
+ {
+ "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HF"]
+ },
+ {
+ "file":"HIVaids_birm_cam/HIVaids_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HIVAIDS"]
+ },
+ {
+ "file":"HIVaids_birm_cam/HIVaids_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HIVAIDS"]
+ },
+ {
+ "file":"HIVaids_birm_cam/HIVaids_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HIVAIDS"]
+ },
+ {
+ "file":"HIVaids_birm_cam/HIVaids_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HIVAIDS"]
+ },
+ {
+ "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARALYSIS"]
+ },
+ {
+ "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARALYSIS"]
+ },
+ {
+ "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARALYSIS"]
+ },
+ {
+ "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARALYSIS"]
+ },
+ {
+ "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ },
+ {
+ "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTENSION"]
+ },
+ {
+ "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTENSION"]
+ },
+ {
+ "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTENSION"]
+ },
+ {
+ "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTENSION"]
+ },
+ {
+ "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTHYROIDISM"]
+ },
+ {
+ "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTHYROIDISM"]
+ },
+ {
+ "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTHYROIDISM"]
+ },
+ {
+ "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPERTHYROIDISM"]
+ },
+ {
+ "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPOTHYROIDISM"]
+ },
+ {
+ "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPOTHYROIDISM"]
+ },
+ {
+ "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPOTHYROIDISM"]
+ },
+ {
+ "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HYPOTHYROIDISM"]
+ },
+ {
+ "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CORONARY_HEART_DISEASE"]
+ },
+ {
+ "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CORONARY_HEART_DISEASE"]
+ },
+ {
+ "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CORONARY_HEART_DISEASE"]
+ },
+ {
+ "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CORONARY_HEART_DISEASE"]
+ },
+ {
+ "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ILD"]
+ },
+ {
+ "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ILD"]
+ },
+ {
+ "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ILD"]
+ },
+ {
+ "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ILD"]
+ },
+ {
+ "file":"Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEARNING_DISABILITY"]
+ },
+ {
+ "file":"Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEARNING_DISABILITY"]
+ },
+ {
+ "file":"Learningdisability_birm_cam/Learningdisability_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEARNING_DISABILITY"]
+ },
+ {
+ "file":"MS_120421_birm_cam/MS_120421_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MULTIPLE_SCLEROSIS"]
+ },
+ {
+ "file":"MS_120421_birm_cam/MS_120421_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MULTIPLE_SCLEROSIS"]
+ },
+ {
+ "file":"MS_120421_birm_cam/MS_120421_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MULTIPLE_SCLEROSIS"]
+ },
+ {
+ "file":"MS_120421_birm_cam/MS_120421_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MULTIPLE_SCLEROSIS"]
+ },
+ {
+ "file":"MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MARFAN_SYNDROME"]
+ },
+ {
+ "file":"MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MARFAN_SYNDROME"]
+ },
+ {
+ "file":"MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MARFAN_SYNDROME"]
+ },
+ {
+ "file":"Menieresdisease_birm_cam/Menieresdisease_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MENIERES_DISEASE"]
+ },
+ {
+ "file":"Menieresdisease_birm_cam/Menieresdisease_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MENIERES_DISEASE"]
+ },
+ {
+ "file":"Menieresdisease_birm_cam/Menieresdisease_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["MENIERES_DISEASE"]
+ },
+ {
+ "file":"MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["METASTATIC_CANCER"]
+ },
+ {
+ "file":"MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["METASTATIC_CANCER"]
+ },
+ {
+ "file":"MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["METASTATIC_CANCER"]
+ },
+ {
+ "file":"MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["METASTATIC_CANCER"]
+ },
+ {
+ "file":"NAFLD_birm_cam/NAFLD_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"NAFLD_birm_cam/NAFLD_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"NAFLD_birm_cam/NAFLD_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["CHRONIC_LIVER_DISEASE"]
+ },
+ {
+ "file":"Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOARTHRITIS"]
+ },
+ {
+ "file":"Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOARTHRITIS"]
+ },
+ {
+ "file":"Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOARTHRITIS"]
+ },
+ {
+ "file":"Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOARTHRITIS"]
+ },
+ {
+ "file":"Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOPOROSIS"]
+ },
+ {
+ "file":"Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOPOROSIS"]
+ },
+ {
+ "file":"Osteoporosis_birm_cam/Osteoporosis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOPOROSIS"]
+ },
+ {
+ "file":"Osteoporosis_birm_cam/Osteoporosis_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["OSTEOPOROSIS"]
+ },
+ {
+ "file":"PTSD_TLC_V2/PTSD_TLC_V2_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PTSD"]
+ },
+ {
+ "file":"PTSD_TLC_V2/PTSD_TLC_V2_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PTSD"]
+ },
+ {
+ "file":"PTSD_TLC_V2/PTSD_TLC_V2_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PTSD"]
+ },
+ {
+ "file":"PTSD_TLC_V2/PTSD_TLC_V2_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PTSD"]
+ },
+ {
+ "file":"PVD_Bham_CAM/PVD_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PVD "]
+ },
+ {
+ "file":"PVD_Bham_CAM/PVD_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PVD "]
+ },
+ {
+ "file":"PVD_Bham_CAM/PVD_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PVD "]
+ },
+ {
+ "file":"PVD_Bham_CAM/PVD_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PVD "]
+ },
+ {
+ "file":"Parkinsons_birm_cam/Parkinsons_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARKINSONS"]
+ },
+ {
+ "file":"Parkinsons_birm_cam/Parkinsons_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARKINSONS"]
+ },
+ {
+ "file":"Parkinsons_birm_cam/Parkinsons_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARKINSONS"]
+ },
+ {
+ "file":"Parkinsons_birm_cam/Parkinsons_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PARKINSONS"]
+ },
+ {
+ "file":"PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["ANAEMIA "]
+ },
+ {
+ "file":"Polycystic ovarian syndrome PCOS_birm_cam/Polycystic ovarian syndrome PCOS_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PCOS"]
+ },
+ {
+ "file":"Polycystic ovarian syndrome PCOS_birm_cam/Polycystic ovarian syndrome PCOS_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PCOS"]
+ },
+ {
+ "file":"Polycystic ovarian syndrome PCOS_birm_cam/Polycystic ovarian syndrome PCOS_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PCOS"]
+ },
+ {
+ "file":"Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PMR "]
+ },
+ {
+ "file":"Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PMR "]
+ },
+ {
+ "file":"Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PMR "]
+ },
+ {
+ "file":"Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PMR "]
+ },
+ {
+ "file":"Primary lung cancer_birm_cam/Primary lung cancer_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PRIMARY_LUNG_CANCER"]
+ },
+ {
+ "file":"Primary lung cancer_birm_cam/Primary lung cancer_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PRIMARY_LUNG_CANCER"]
+ },
+ {
+ "file":"Primary lung cancer_birm_cam/Primary lung cancer_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PRIMARY_LUNG_CANCER"]
+ },
+ {
+ "file":"Primary lung cancer_birm_cam/Primary lung cancer_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PRIMARY_LUNG_CANCER"]
+ },
+ {
+ "file":"PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
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+ "meldb_phenotypes":["PROSTATE_CANCER"]
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+ {
+ "file":"PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
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+ "meldb_phenotypes":["PROSTATE_CANCER"]
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+ {
+ "file":"PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PROSTATE_CANCER"]
+ },
+ {
+ "file":"PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PROSTATE_CANCER"]
+ },
+ {
+ "file":"Psoriasis_birm_cam/Psoriasis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS"]
+ },
+ {
+ "file":"Psoriasis_birm_cam/Psoriasis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS"]
+ },
+ {
+ "file":"Psoriasis_birm_cam/Psoriasis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS"]
+ },
+ {
+ "file":"Psoriasis_birm_cam/Psoriasis_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS"]
+ },
+ {
+ "file":"PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS_ARTHRITIS"]
+ },
+ {
+ "file":"PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS_ARTHRITIS"]
+ },
+ {
+ "file":"PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS_ARTHRITIS"]
+ },
+ {
+ "file":"PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PSORIASIS_ARTHRITIS"]
+ },
+ {
+ "file":"Renal transplant_MM_birm_cam/Renal transplant_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RENAL_TRANSPLANT"]
+ },
+ {
+ "file":"Renal transplant_MM_birm_cam/Renal transplant_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RENAL_TRANSPLANT"]
+ },
+ {
+ "file":"Renal transplant_MM_birm_cam/Renal transplant_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RENAL_TRANSPLANT"]
+ },
+ {
+ "file":"RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RHEUMATOID_ARTHRITIS"]
+ },
+ {
+ "file":"RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RHEUMATOID_ARTHRITIS"]
+ },
+ {
+ "file":"RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RHEUMATOID_ARTHRITIS"]
+ },
+ {
+ "file":"RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["RHEUMATOID_ARTHRITIS"]
+ },
+ {
+ "file":"SchizophreniaMM/SchizophreniaMM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SCHIZOPHRENIA"]
+ },
+ {
+ "file":"SchizophreniaMM/SchizophreniaMM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SCHIZOPHRENIA"]
+ },
+ {
+ "file":"SchizophreniaMM/SchizophreniaMM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SCHIZOPHRENIA"]
+ },
+ {
+ "file":"SchizophreniaMM/SchizophreniaMM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SCHIZOPHRENIA"]
+ },
+ {
+ "file":"SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEAFNESS"]
+ },
+ {
+ "file":"SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEAFNESS"]
+ },
+ {
+ "file":"SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DEAFNESS"]
+ },
+ {
+ "file":"SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SKIN_CANCER"]
+ },
+ {
+ "file":"SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SKIN_CANCER"]
+ },
+ {
+ "file":"SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SKIN_CANCER"]
+ },
+ {
+ "file":"SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SKIN_CANCER"]
+ },
+ {
+ "file":"StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["STROKE "]
+ },
+ {
+ "file":"SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DRUG_ALCOHOL_MISUSE"]
+ },
+ {
+ "file":"Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_SCLEROSIS"]
+ },
+ {
+ "file":"Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_SCLEROSIS"]
+ },
+ {
+ "file":"Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_SCLEROSIS"]
+ },
+ {
+ "file":"Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_SCLEROSIS"]
+ },
+ {
+ "file":"Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_LUPUS_ERYTHEMATOSUS"]
+ },
+ {
+ "file":"Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_LUPUS_ERYTHEMATOSUS"]
+ },
+ {
+ "file":"Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_LUPUS_ERYTHEMATOSUS"]
+ },
+ {
+ "file":"Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["SYSTEMIC_LUPUS_ERYTHEMATOSUS"]
+ },
+ {
+ "file":"TIA_Bham_CAM/TIA_Bham_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["TIA"]
+ },
+ {
+ "file":"TIA_Bham_CAM/TIA_Bham_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["TIA"]
+ },
+ {
+ "file":"TIA_Bham_CAM/TIA_Bham_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["TIA"]
+ },
+ {
+ "file":"TIA_Bham_CAM/TIA_Bham_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["TIA"]
+ },
+ {
+ "file":"Thalassaemia_birm_cam/Thalassaemia_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["THALASSAEMIA"]
+ },
+ {
+ "file":"Thalassaemia_birm_cam/Thalassaemia_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["THALASSAEMIA"]
+ },
+ {
+ "file":"Thalassaemia_birm_cam/Thalassaemia_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["THALASSAEMIA"]
+ },
+ {
+ "file":"Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T1"]
+ },
+ {
+ "file":"Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T1"]
+ },
+ {
+ "file":"Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T1"]
+ },
+ {
+ "file":"Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T1"]
+ },
+ {
+ "file":"Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T2"]
+ },
+ {
+ "file":"Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T2"]
+ },
+ {
+ "file":"Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T2"]
+ },
+ {
+ "file":"Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETES_T2"]
+ },
+ {
+ "file":"Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["IBD "]
+ },
+ {
+ "file":"VTEnoPE_birm_cam/VTEnoPE_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["VTD"]
+ },
+ {
+ "file":"VTEnoPE_birm_cam/VTEnoPE_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["VTD"]
+ },
+ {
+ "file":"VTEnoPE_birm_cam/VTEnoPE_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["VTD"]
+ },
+ {
+ "file":"ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HEART_VALVE_DISORDERS"]
+ },
+ {
+ "file":"ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HEART_VALVE_DISORDERS"]
+ },
+ {
+ "file":"ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HEART_VALVE_DISORDERS"]
+ },
+ {
+ "file":"ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["HEART_VALVE_DISORDERS"]
+ },
+ {
+ "file":"Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BLINDNESS_AND_LOW_VISION"]
+ },
+ {
+ "file":"Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BLINDNESS_AND_LOW_VISION"]
+ },
+ {
+ "file":"Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BLINDNESS_AND_LOW_VISION"]
+ },
+ {
+ "file":"Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["BLINDNESS_AND_LOW_VISION"]
+ },
+ {
+ "file":"diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETIC_RETINOPATHY"]
+ },
+ {
+ "file":"diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETIC_RETINOPATHY"]
+ },
+ {
+ "file":"diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETIC_RETINOPATHY"]
+ },
+ {
+ "file":"diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIABETIC_RETINOPATHY"]
+ },
+ {
+ "file":"diverticular_disease_birm_cam/diverticular_disease_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIVERTICULAR_DISEASE"]
+ },
+ {
+ "file":"diverticular_disease_birm_cam/diverticular_disease_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIVERTICULAR_DISEASE"]
+ },
+ {
+ "file":"diverticular_disease_birm_cam/diverticular_disease_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIVERTICULAR_DISEASE"]
+ },
+ {
+ "file":"diverticular_disease_birm_cam/diverticular_disease_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["DIVERTICULAR_DISEASE"]
+ },
+ {
+ "file":"leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEUKAEMIA"]
+ },
+ {
+ "file":"leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEUKAEMIA"]
+ },
+ {
+ "file":"leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEUKAEMIA"]
+ },
+ {
+ "file":"leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LEUKAEMIA"]
+ },
+ {
+ "file":"lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LYMPHOMA"]
+ },
+ {
+ "file":"lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LYMPHOMA"]
+ },
+ {
+ "file":"lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["LYMPHOMA"]
+ },
+ {
+ "file":"plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_GOLD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PLASMACELL"]
+ },
+ {
+ "file":"plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_AURUM.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PLASMACELL"]
+ },
+ {
+ "file":"plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_IMRD.csv",
+ "columns":{
+ "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PLASMACELL"]
+ },
+ {
+ "file":"plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_ICD10.csv",
+ "columns":{
+ "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
+ "metadata":["DESCRIPTION"]
+ },
+ "meldb_phenotypes":["PLASMACELL"]
+ }
+ ]
+ },
+ {
+ "folder":"codes/NEW BURDEN CODELISTS",
+ "description":"New Buden Codes - downloaded 20/03/24",
+ "files": [
+ {
+ "file":"Accumulation and complexity/CARE_COORDINATION.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["CARE_COORDINATION"]
+ },
+ {
+ "file":"Accumulation and complexity/DRUG_INTERACTION.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DRUG_INTERACTION"]
+ },
+ {
+ "file":"Accumulation and complexity/SELF_ADVOCACY_SELF HELP.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SELF_ADVOCACY_SELF_HELP"]
+ },
+ {
+ "file":"Emotions/ACCEPTANCE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ACCEPTANCE"]
+ },
+ {
+ "file":"Emotions/ACCEPTANCE_readv3.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "read3_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ACCEPTANCE"]
+ },
+ {
+ "file":"Emotions/ANGER.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ANGER"]
+ },
+ {
+ "file":"Emotions/DESPAIR.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DESPAIR"]
+ },
+ {
+ "file":"Emotions/EMBARASSMENT.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["EMBARRASSMENT"]
+ },
+ {
+ "file":"Emotions/FEAR.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["FEAR"]
+ },
+ {
+ "file":"Emotions/FRUSTRATION.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["FRUSTRATION"]
+ },
+ {
+ "file":"Emotions/FRUSTRATION_readv3.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "read3_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["FRUSTRATION"]
+ },
+ {
+ "file":"Emotions/GUILT.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["GUILT"]
+ },
+ {
+ "file":"Emotions/LOW_SELF_ESTEEM.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["LOW_SELF_ESTEEM"]
+ },
+ {
+ "file":"Emotions/SADNESS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SADNESS"]
+ },
+ {
+ "file":"Emotions/SHAME.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SHAME"]
+ },
+ {
+ "file":"Emotions/SHAME_readv3.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "read3_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SHAME"]
+ },
+ {
+ "file":"Emotions/STRESS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["STRESS"]
+ },
+ {
+ "file":"Emotions/SUICIDAL.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SUICIDAL"]
+ },
+ {
+ "file":"Finance/BENEFITS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["BENEFITS"]
+ },
+ {
+ "file":"Health Service and administration/ADMISSION.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ADMISSION"]
+ },
+ {
+ "file":"Health Service and administration/DNA.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DNA"]
+ },
+ {
+ "file":"Investigation and monitoring/BLOOD_PRESSURE_READING.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["BLOOD_PRESSURE_READING"]
+ },
+ {
+ "file":"Investigation and monitoring/DRUG_MONITORING.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DRUG_MONITORING"]
+ },
+ {
+ "file":"Investigation and monitoring/MONITORING.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["MONITORING"]
+ },
+ {
+ "file":"Investigation and monitoring/PHYSICAL_EXAMINATION.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["PHYSICAL_EXAMINATION"]
+ },
+ {
+ "file":"Investigation and monitoring/RESPIRATORY_TESTS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["RESPIRATORY_TESTS"]
+ },
+ {
+ "file":"Learning and adapting/ALCOHOL_ADVICE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ALCOHOL_ADVICE"]
+ },
+ {
+ "file":"Learning and adapting/BEREAVEMENT.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["BEREAVEMENT"]
+ },
+ {
+ "file":"Learning and adapting/DIET_ADVICE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DIET_ADVICE"]
+ },
+ {
+ "file":"Learning and adapting/EMPLOYMENT_PROBLEM.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["EMPLOYMENT_PROBLEM"]
+ },
+ {
+ "file":"Learning and adapting/HOUSING_PROBLEM.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["HOUSING_PROBLEM"]
+ },
+ {
+ "file":"Learning and adapting/LIFESTYLE_ADVICE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["LIFESTYLE_ADVICE"]
+ },
+ {
+ "file":"Learning and adapting/NEEDS_HELP.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["NEEDS_HELP"]
+ },
+ {
+ "file":"Learning and adapting/NOT_COPING.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["NOT_COPING"]
+ },
+ {
+ "file":"Learning and adapting/PHYS_ACT__ADVICE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["PHYSICAL_ACTIVITY_ADVICE"]
+ },
+ {
+ "file":"Learning and adapting/SMOKING_STATUS_ASSESSED.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SMOKING_STATUS_ASSESSED"]
+ },
+ {
+ "file":"Learning and adapting/WEIGHT_LOSS_ADVICE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["WEIGHT_LOSS_ADVICE"]
+ },
+ {
+ "file":"Medication work/ADHERENCE_PROBLEMS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["ADHERENCE_PROBLEMS"]
+ },
+ {
+ "file":"Medication work/DIFFICULTY_MANAGING_MEDICATION.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DIFFICULTY_WITH_MEDICATION"]
+ },
+ {
+ "file":"Medication work/DRUG_ADVERSE_EFFECT.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["DRUG_ADVERSE_EFFECT"]
+ },
+ {
+ "file":"Symptoms/BREATHLESSNESS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["BREATHLESSNESS"]
+ },
+ {
+ "file":"Symptoms/CHEST_PAIN.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["CHEST_PAIN"]
+ },
+ {
+ "file":"Symptoms/CONFUSED.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["CONFUSED"]
+ },
+ {
+ "file":"Symptoms/COUGH.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["COUGH"]
+ },
+ {
+ "file":"Symptoms/GAIT_PROBLEMS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["GAIT_PROBLEMS"]
+ },
+ {
+ "file":"Symptoms/GI_PAIN.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["GI_PAIN"]
+ },
+ {
+ "file":"Symptoms/MEMORY_PROBLEMS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["MEMORY_PROBLEMS"]
+ },
+ {
+ "file":"Symptoms/MOBILITY_PROBLEMS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["MOBILITY_PROBLEMS"]
+ },
+ {
+ "file":"Symptoms/NAUSEA.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["NAUSEA"]
+ },
+ {
+ "file":"Symptoms/REDUCED_APPETITE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["REDUCED_APPETITE"]
+ },
+ {
+ "file":"Symptoms/REDUCED_PHYSICAL_STRENGTH.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["REDUCED_PHYSICAL_STRENGTH"]
+ },
+ {
+ "file":"Symptoms/SLEEP_PROBLEMS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SLEEP_PROBLEMS"]
+ },
+ {
+ "file":"Symptoms/SWEATING.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["SWEATING"]
+ },
+ {
+ "file":"Symptoms/TIREDNESS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["TIREDNESS"]
+ },
+ {
+ "file":"Symptoms/UNINTENTIONAL_WEIGHT_LOSS.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["UNINTENTIONAL_WEIGHT_LOSS"]
+ },
+ {
+ "file":"Symptoms/URINARY_INCONTINENCE.xlsx",
+ "excel_sheet":"Sheet1",
+ "columns":{
+ "snomed_code":"Codes",
+ "metadata":["description"]
+ },
+ "meldb_phenotypes": ["URINARY_INCONTINENCE"]
+ }
+ ]
+ }
+ ]
+
+}
+
+
diff --git a/PHEN_summary_working.csv b/PHEN_summary_working.csv
new file mode 100644
index 0000000000000000000000000000000000000000..827cce4d4090ce5a359bc78f815fd00d1e79e06d
--- /dev/null
+++ b/PHEN_summary_working.csv
@@ -0,0 +1,276 @@
+#,CONCEPT NAME ,CONCEPT DESCRIPTION,CONCEPT TYPE,CONCEPT ONTOLOGY CLASS,DATE ADDED ,REQUEST REASON ,SOURCE INFO,FUNCTION,FUNCTION,CODING LIST,CONSIDERED,AGREED,PROCESSED,IMPORTED_SAIL,READv2_CODE,ICD10_CODE,NOTES,Relation to Ontology
+18,ABDO_PAIN,Abdominal pain,Workload indicator (symptom),,2023-08-25,SF - requested by email - symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Abdominal%20pain/res176-abdominal-pain.csv ,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.
+2023-09-22: SF confirmed to use and proceed to processing.",YES WITH ISSUES
+155,ACCEPTANCE,Acceptance,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,PENDING,PENDING,PENDING,PENDING,,
+51,ADDISONS_DISEASE,Addison's disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>addisons disease,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_AURUM.csv,
+https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_GOLD.csv,
+ https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_ICD10.csv,
+ https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+186,ADHERENCE_PROBLEMS,Adherence problems,Workload indicator (medication),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,YES,YES,NO,,
+168,ADMISSION,Admission,Workload indicator (health services),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+39,AGE_ONSET,Age at onset of first condition,Workload indicator (accumulation),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,DIRECT SELECTION,n/a,"Agreed a derived age on entry to cohort variable, along the week of birth is already available and these can be used by the project team to calculate age at different times in the study as required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed a derived age on entry to cohort variable, along the week of birth is already available and these can be used by the project team to calculate age at different times in the study as required in the data, which is already available in SAIL.",YES
+175,ALCOHOL_ADVICE,Alcohol advice,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,yes,NO,,
+148,ALL_MEDICATIONS,All medications,Workload indicator (medication),,2023-12-01,Discussed at WP2 meeting. In order to allow identification of all drugs used by each cohort member,YES,QUERY BY CODING LIST,"http://dx.doi.org/10.1136/jech-2021-217090
+
+with amendments made to source by project team",https://git.soton.ac.uk/meld/meldb-external/phenotype/-/blob/main/codes/Medication%20code%20source/WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx?ref_type=heads,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-12-01: Agreed through discussion on GitLab issue (https://git.soton.ac.uk/meld/meldb-external/wp3/proxy-burdensome-indicators/-/issues/13) from SF that the Wilkinson et al. paper is to be used for this concept, with the known limitation it may be missing Read codes for drugs which were not included/in scope of the cited paper.
+
+2024-02-20: From GitLab Issue (https://git.soton.ac.uk/meld/meldb-external/wp2/-/issues/71) regenerated file using a new list with the additions on Wilkinson Code and Drug Category metadata (https://sotonac.sharepoint.com/:x:/r/teams/NIHR_AIM_MELD-B_Research_Collaboration/_layouts/15/Doc.aspx?sourcedoc=%7BBC0FDB60-739B-4FB9-BE4F-61783439C67D%7D&file=WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx&action=default&mobileredirect=true)",
+54,ANAEMIA,Anaemia,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>haematological disorder>anaemia,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Folate%20deficiency_birm_cam/Folate%20deficiency_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Folate%20deficiency_birm_cam/Folate%20deficiency_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Folate%20deficiency_birm_cam/Folate%20deficiency_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+55,ANEURYSM,Aneurysm,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>aneurysm,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+156,ANGER,Anger,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+56,ANKYLOSING_SPONDYLITIS,Ankylosing spondylitis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>ankylosing spondylitis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/AnkylosingSpondylitis_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+57,ANXIETY,Anxiety,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>anxiety
+
+NEED TO CONSIDER HOW TO CLASSIFY THE DIFFERENT ASPECTS OF THIS e.g. Occurrant>Process CAN ALSO BE A SYMPTOM AND AN ANXIETY ATTACK CAN BE AN EVENT....",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+58,ARRHYTHMIA,Arrhythmia,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>arrhythmia,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+59,ASTHMA,Asthma,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>asthma,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+60,ATOPIC_ECZEMA,Atopic Eczema,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>skin disease>atopic eczema
+
+NOTE: dermo disorder is NOT currently a class in the BBO - need to add it",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/AtopicEczema_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+61,AUTISM_AND_ADHD,Autism and ADHD,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>autism and ADHD,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+40,AVG_ACCRUAL_TIME,Average interval between accrual of conditions,Workload indicator (accumulation),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, which is already available in SAIL.",
+167,BENEFITS,Benefits,Workload indicator (financial),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+176,BEREAVEMENT,Bereavement,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+62,BIPOLAR_DISORDER,Bipolar Disorder,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>bipolar disorder,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Bipolar_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+63,BLINDNESS_AND_LOW_VISION,Blindness and low vision,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>eye disease>blindness and low vision,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+170,BLOOD_PRESSURE_READING,Blood pressure reading,Workload indicator (investigation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,no,,
+149,BMI,BMI (Body Mass Index),TBC,,2023-12-01,Discussed at WP2 and WP4 meeting.,YES,FUNCTION,TBC - paper pending publication to be added once published,Agreed to use the existing method/function - will be used and implemented but does not require processing by the MELD-B team into a machine readable standard format.,COMPLETE,USE,N/A,COMPLETE,N/A,N/A,,YES WITH ISSUES
+64,BREAST_CANCER,Breast Cancer,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>breast cancer,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/BreastCancer_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+189,BREATHLESSNESS,Breathlessness,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+65,BRONCHIECSTASIS,Bronchiectasis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>bronchiecstasis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+152,CARE_COORDINATION,Care coordination,Workload indicator (accumulation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+190,CHEST_PAIN,Chest pain,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+66,CHRONIC_BACK_PAIN,Chronic back pain,Long-term condition,"NOTE: need to consider this (and all PAIN conditions) carefully, as this one could be a Musculoskeletal Disorder, but it could also be a Neurlogical Disorder resulting from e.g. Sciatica; or it could be an Inflammatory Condition caused by e.g. Ankylosing Spondylitis; or it could be caused by poor posture, reptitive strain, stress, anxiety....etc",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Chronicbackpain_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES
+67,CHRONIC_FATIGUE_SYNDROME,Chronic Fatigue Syndrome,Long-term condition,"Alt Name 1: CFS
+Alt Name 2: myalgic encephalomyelitis (ME)
+
+NOTE: CFS has 'unknown etiology' loosely falling under 'Neurological Disorders', which is NOT currently a class within the BBO -we need to add it to a new class 'Unkown Etiology'",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/ChronicFatigueSyndromeMM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,Disagregate - DONE,YES
+68,CHRONIC_LIVER_DISEASE,Chronic liver disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>chronic liver disease,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/NAFLD_birm_cam/NAFLD_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/NAFLD_birm_cam/NAFLD_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/NAFLD_birm_cam/NAFLD_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+69,CHRONIC_PAIN,Chronic pain,Long-term condition,NOTE: see Chronic Back Pain - ADDITONALLY this is often considered as a symptom rather than a condition,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,Disagregate- DONE,
+70,CHRONIC_SINUSITIS,Chronic sinusitis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>chronic sinusitis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,NO
+71,CKD_STAGE3_5,Chronic kidney disease stage 3_5,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>urogenital disorder>chronic kidney disease (Stage 3-5)
+
+Alt Name: CKD",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/CKDstage3to5_Bham_CAM,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+72,COELIAC_DISEASE,Coeliac disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>coeliac disease,2023-06-01,Added following PPI review 20/03/2023,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Coeliac_disease_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,Added following PPI review,
+73,COLON_CANCER,Colon Cancer,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>colon cancer,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Colon_cancer__bham_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,N/A
+191,CONFUSED,Confused,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+74,CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES,Congenital disease and chromosomal abnormalities,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>congential disease>congential disease and chromosomal abnormalities,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,N/A
+75,COPD,Chronic obstructive pulmonary disease,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>chronic obstructive pulmonary disease
+
+Alt Name: COPD",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+76,CORONARY_HEART_DISEASE,Coronary heart disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>coronary heart disease,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+192,COUGH,Cough,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+9,CVD_EVENTS,Cardiovascular events,Outcome event,,2023-08-25,SF - requested by email - to explore an examplar 'outcome measure',YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Cardiovascular%20events%20(ICD10)/res52-cardiovascular-events-icd10.csv,COMPLETE,USE,COMPLETE,COMPLETE,NO,YES,"2023-11-17 - Code cannot currently be PROCESSED = COMPLETE as no mappings from ICD10 to Read v2 exist, pending confirmation from clinical team on next steps.",YES WITH ISSUES
+77,CYSTIC_FIBROSIS,Cystic fibrosis ,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>cystic fibrosis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+78,DEAFNESS,Deafness,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>ear disease>deafness,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,N/A
+79,DEMENTIA_ALZHEIMER,Dementia_alzheimer,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>dementia and alzheimer,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+80,DEPRESSION,Depression,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>depression,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+29,DEPRIVATION,Socioeconomic deprivation – people in IMD quintiles 1&2,Workload indicator (financial),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,DIRECT SELECTION,n/a,"Agreed to use WIMD 2019 which is already available in the cohort table, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that the WIMD 2019 linked to the LSOA 2011 will be used to look at residence of individual at cohort entry date, which is already available in the cohort table in SAIL.",YES
+157,DESPAIR,Despair,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+82,DIABETES_T1,Diabetes Type 1 ,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine diseases>diabetes>diabetes type 1,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Type1DM_11_3_21_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+83,DIABETES_T2,Diabetes Type 2,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine diseases>diabetes>diabetes type 2,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Type2Diabetes_11_3_21_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,Missing BBO Class
+84,DIABETIC_RETINOPATHY,Diabetic retinopathy,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>eye disease>diabetic retinopathy,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/diabetic_retinopathy_090121_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10_diabetic%20retinopathy_SimonFraser-icd10-diabetic-retinopathy-0dfa4243.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+85,DIALYSIS,Dialysis,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Dialysis%20MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Dialysis%20MM_birm_cam/Dialysis%20MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Dialysis%20MM_birm_cam/Dialysis%20MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Dialysis%20MM_birm_cam/Dialysis%20MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10%20Dialysis_%20SimonFraser-dialysis-3d6668b7%20.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+17,DID_NOT_ATTEND,Did not attend appointment,Workload indicator (health services),,2023-08-25,SF - requested by email - from discussions with Frances Mair,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Non-attendance%20codes/res201-did-not-attend-appointment.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+177,DIET_ADVICE,Diet advice,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+187,DIFFICULTY_WITH_MEDICATION,Difficulty with medication,Workload indicator (medication),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+86,DIVERTICULAR_DISEASE,Diverticular disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>diverticular disease,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+169,DNA,Did not attend,Workload indicator (health services),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+188,DRUG_ADVERSE_EFFECT,Drug adverse effect,Workload indicator (medication),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+87,DRUG_ALCOHOL_MISUSE,Drug or alcohol misuse,Long-term condition,"SUGGEST: entity>occurrent>process>behaviour>harmful behaviour>burdensome harmful behaviour>drug and alcohol misuse
+
+NEEDS DISCUSSION",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+153,DRUG_INTERACTION,Drug interaction,Workload indicator (accumulation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+171,DRUG_MONITORING,Drug monitoring,Workload indicator (investigation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+88,EATING_DISORDERS,Eating disorders,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>eating disorders,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+89,EHLERS_DANLOS_SYNDROME,Ehlers Danlos Syndrome,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>ehlers danlos syndrome,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/EhlersDanlosSyndrome3_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES
+158,EMBARRASSMENT,Embarrassment,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+178,EMPLOYMENT_PROBLEM,Employment problem,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+90,ENDOMETRIOSIS,Endometriosis,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+91,EPILEPSY,Epilepsy,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+19,FALLS,Falls,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Falls/res178-fall.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Falls/res202-falls-outcome.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+20,FATIGUE,Fatigue,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Fatigue/res175-fatigue.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",YES
+159,FEAR,Fear,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+92,FIBROMYALGIA,Fibromyalgia,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>fibromyalgia,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Fibromyalgia_Bham_CAM,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+27,FRAILTY_PRIMARY_CARE,Frailty from the eFI in primary care,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,FUNCTION,https://academic.oup.com/ageing/article/48/6/922/5576114,Agreed to use the existing method/function - will be used and implemented but does not require processing by the MELD-B team into a machine readable standard format.,COMPLETE,USE,N/A,COMPLETE,N/A,N/A,"2023-09-08: Confirmation on whether to use the existing method and code base, or does it need to be PROCESSED (and define which 1 or more look back periods to run the method on?)
+2023-09-22: Confirmed in WP2 meeting for this and methods/functions that are established and published already, where the clinical group confirm they are suitable then we will use the existing method/function without reprocessing the code lists in MELD-B. Agreed to USE and will proceed to extraction within the TRE/data.
+2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+28,FRAILTY_SECONDARY_CARE,Frailty from the HFRS in secondary care,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,FUNCTION,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946808/,Agreed to use the existing method/function - will be used and implemented but does not require processing by the MELD-B team into a machine readable standard format.,COMPLETE,USE,N/A,COMPLETE,N/A,N/A,"2023-09-08: Confirmation on whether to use the existing method and code base, or does it need to be PROCESSED (and define which 1 or more look back periods to run the method on?)
+2023-09-22: Confirmed in WP2 meeting for this and methods/functions that are established and published already, where the clinical group confirm they are suitable then we will use the existing method/function without reprocessing the code lists in MELD-B. Agreed to USE and will proceed to extraction within the TRE/data.
+2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+160,FRUSTRATION,Frustration,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,pending,PENDING,PENDING,PENDING,,
+194,GAIT_PROBLEMS,Gait problems,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+195,GI_PAIN,Gi pain,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+93,GLAUCOMA,Glaucoma,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>eye disease>glaucoma,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+94,GOUT,Gout,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>gout,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+161,GUILT,Guilt,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+21,HEADACHE,Headache,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Headache/res175-headache.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.
+2023-09-22: SF confirmed to useand proceed to processing.",YES
+96,HEART_VALVE_DISORDERS,Heart valve disorders,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>heart valve disorders,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+97,HF,Heart failure,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>heart failure
+
+Alt label: HF
+
+NOTE: Heart Failure could be classified as an Event rather than a condition",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+98,HIVAIDS,HIV/AIDS,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>HIV aids,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,SENSITIVE,YES,YES,,
+179,HOUSING_PROBLEM,Housing problem,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+99,HYPERTENSION,Hypertension,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>hypertension,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+100,HYPERTHYROIDISM,Hyperthyroidism,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>hyperthyroidism,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Hyperthyroidism%20V2_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+101,HYPOTHYROIDISM,Hypothyroidism,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>hypothyroidism,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Hypothyroidism%20draft%20V1_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+102,IBD,Inflammatory bowel disease,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>infammatory bowel disease
+
+Alt label: IBD",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+103,IBS,Irritable bowel syndrome,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>irrititable bowel syndrome
+
+Alt label: IBS",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES WITH ISSUES
+104,ILD,Inflammatory lung disease,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>inflammatory lung disease
+
+Alt label: ILD",2023-06-01,Added following PPI review 20/03/2023,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/ILD_sh_20092020_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,Added following PPI review,
+22,INCONTINENCE,Incontinence,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Incontinence/res11-incontinence.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,Missing BBO Class
+107,LEARNING_DISABILITY,Learning disability,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>learning disability,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Learningdisability_birm_cam/Learningdisability_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+108,LEUKAEMIA,Leukaemia,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>leaukaemia,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/leukaemia_prevalence_birm_cam
+","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+180,LIFESTYLE_ADVICE,Lifestyle advice,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+47,LONELINESS,Loneliness,Workload indicator (emotional),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,YES,QUERY BY CODING LIST,https://www.opencodelists.org/,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-loneliness-4c12ea5a.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-loneliness-5d0a1dad.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators 2023-11-17 - Codes cannot be currectly processed JAKUB to investigate,YES WITH ISSUES
+7,LONGCOVID,LONG COVID,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>long covid,2023-07-01,SF - requested by email,YES,FUNCTION,https://www.adruk.org/news-publications/publications-reports/data-insight-clinical-coding-and-capture-of-long-covid-a-cohort-study-in-wales-using-linked-health-and-demographic-data-824/,https://sotonac.sharepoint.com/:x:/r/teams/MELD-Coding/_layouts/15/Doc.aspx?sourcedoc=%7BBA07F810-6D4D-4586-80AA-5EF4E84E0CAF%7D&file=LongCovid_codes.xlsx&action=default&mobileredirect=true,COMPLETE,USE,N/A,COMPLETE,YES,YES,"Need a solution, raised many times. Problem is we have SNOMED rather than Readcode, does not exist in readcode, how has it been coded in SAIL beyond 2020. Ask ashley. https://git.soton.ac.uk/meld/meldb-external/wp2/-/issues/44
+Update: LONG COVID phenotype confirmed by Ashley developed by ADR Wales programme as set of read codes available in SAIL. Shared within SAIL with Roberta, will be shared here as soon as published to be reviewed by MELD clinical group and agreed for use or any changes.
+2023-09-08: Report published, codes agreed and to be implemented, to be created as CSV.
+2023-09-22: Confirmed in WP02 meeting to use existing code list, at the moment covers ICD-10 and local Read codes for EMIS and VISION gp system vendors - further work may be needed when accessing CPRD if other gp system vendors are being used or to add SNOMED or other coding classifications.",YES WITH ISSUES
+162,LOW_SELF_ESTEEM,Low self esteem,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+41,LTCS_TOTAL,Total number of long-term conditions (at different time points),Workload indicator (accumulation),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, which is already available in SAIL.",NO
+110,LYMPHOMA,Lymphoma,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>lymphoma,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/lymphoma_prevalence_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES
+111,MARFAN_SYNDROME,Marfan Syndrome,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>marfan syndrome,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/MarfanSyndrome_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,Missing BBO Class
+197,MEMORY_PROBLEMS,Memory problems,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+112,MENIERES_DISEASE,Meniere’s disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>ear disease>menieres disease,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Menieresdisease_birm_cam/Menieresdisease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Menieresdisease_birm_cam/Menieresdisease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Menieresdisease_birm_cam/Menieresdisease_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+113,METASTATIC_CANCER,Metastatic cancer,Long-term condition - see WP3 list as this NOT considered a Condition (it is a Stage of Progression of Cancer) - needs discussion,"entity>occurant>process>stage of progression>metastatic (stage IV)
+
+Also need classes for Stage I, II & III",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/MetastaticCancer_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+198,MOBILITY_PROBLEMS,Mobility problems,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+172,MONITORING,Monitoring,Workload indicator (investigation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+10,MOTOR_NEURONE_DISEASE,Motor neurone disease,Long-term condition,,2023-08-25,SF - requested by email - PPI recommendation,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Motor%20neurone%20disease/phenotype_PH62_ver_124_concepts_20230719T112819.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+23,MSK_PAIN,Musculoskeletal pain,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Musculoskeletal%20pain/res175-msk-pain.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES WITH ISSUES
+114,MULTIPLE_SCLEROSIS,Multiple sclerosis,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+199,NAUSEA,Nausea,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+181,NEEDS_HELP,Needs help,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+24,NEUROPATH_PAIN,Neuropathic pain,Long-term condition,,2023-08-25,SF - requested by email- symptom example from WP1 QES,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Neuropathic%20pain/res55-neuropathic_pain.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES
+182,NOT_COPING,Not coping,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+34,NUM_AE_APP,Number of A&E (emergency department) appointments,Workload indicator (health services),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all ED attendance records are extracted from EDDS and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all ED attendance records from EDDS will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",YES WITH ISSUES
+36,NUM_BLOOD_TESTS,Number of blood tests ,Workload indicator (investigation),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all blood tests are extracted from WRRS and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all blood tests from WRRS will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",YES WITH ISSUES
+33,NUM_GP_APP,Number of GP appointments (if possible by type i.e. in person/virtual/phone),Workload indicator (health services),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all GP event records are extracted from WLGP and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all GP event records from WLGP will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",YES
+35,NUM_HOSPITAL_ADM,Number of admissions to hospital (by type if possible – emergency vs. elective,Workload indicator (health services),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all hospital admission records are extracted from PEDW and OPDW and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all hospital admission records from PEDW and OPDW will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+32,NUM_HOSPITAL_APP_SPECIAL,Number of different kinds of hospital appointments,Workload indicator (health services),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all hospital admission records are extracted from PEDW and OPDW and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all hospital admission records from PEDW and OPDW will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",YES
+31,NUM_HOSPITAL_APP_TOTAL,Number and frequency of hospital appointments,Workload indicator (health services),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all hospital admission records are extracted from PEDW and OPDW and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all hospital admission records from PEDW and OPDW will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",YES
+30,NUM_MEDICATIONS,Number of medications,Workload indicator (medication),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed to extract all medications from the WLGP data rather than defining a specific list of defined medication phenotypes which is already available in SAIL, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-10-10: Agreed that all prescribed medications from the WLGP will be extracted rather than a specific list of defined medications agreed at this time, which is already available in SAIL.",
+37,NUM_OTHER_INVESTIGATIONS,Number of other investigations ,Workload indicator (investigation),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,NO,AGGREGATION,n/a,"Agreed all records are extracted from available data sources and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",COMPLETE,USE,N/A,N/A,N/A,N/A,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators (https://git.soton.ac.uk/meld/meldb-external/wp2/-/issues/56).
+2023-12-11: Confirmed will be explored by RSF tool as a future aspiration, in addition to aggregation of existing concepts.",YES WITH ISSUES
+49,OBESITY,"This is specifically obesity, not overweight.",Workload indicator (symptom),,2023-10-11,"SF, EH and RF in discussion",YES,QUERY BY CODING LIST,https://www.opencodelists.org/,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-obesity-19f403f0.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-obesity-3050b72f.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"We will probably want to supplement this later by our own analyses of BMI using weight and height in the cohort. This currently includes codes for obesity.
+2023-11-17: Codes cannot be currently processed JAKUB to investigate",YES
+11,OCD,Obsessive compulsive disorder,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>obsessive compulsive disorder
+
+Alt label: OCD",2023-08-25,SF - requested by email - PPI recommendation,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Obsessive%20Compulsive%20Disorder/phenotype_PH223_ver_446_concepts_20230719T114228.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+115,OSTEOARTHRITIS,Osteoarthritis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>osteoarthritis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+116,OSTEOPOROSIS,Osteoporosis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>osteoporosis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+150,PAIN_MEDICATIONS,Drugs that are painkillers,Workload indicator (medication),,2023-12-13,Discussion between WP1 and WP3 2023/12/13 agreed new method for identifying pain from medication use,YES,QUERY BY CODING LIST,From Hanlon paper (1. Hanlon_et_al.pdf ) but modified by MELD-B clinicians to add a few additional medications,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Medication%20code%20source/Pain%20medications/Read_codes_for_pain_drugs.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,2023-12-13: All of these drugs are used for pain. To identify the presence of pain use all drugs in this list and all drugs in the 'PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS' if either is prescribed 4 or more times in a calendar year,
+151,PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS,Drugs that are antiepileptic drugs that are also used for pain,Workload indicator (medication),,2023-12-13,Discussion between WP1 and WP3 2023/12/13 agreed new method for identifying pain from medication use,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf ,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Medication%20code%20source/Pain%20medications/Read_codes_for_pain_drugs_if_no_epilepsy_diagnosis.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,2023-12-13: To ensure that these drugs are being prescribed for pain it is necessary to make sure that there is no diagnosis of EPILEPSY in the person's record (i.e. NOT those with a diagnosis of epilepsy from row 91 in this spreadsheet). To identify the presence of pain use all drugs in this list used in people without epilepsy and all drugs in the 'PAIN_MEDICATIONS' if either is prescribed 4 or more times in a calendar year,
+16,PALLIATIVE_CARE,Palliative care,Workload indicator (health services),,2023-08-25,SF - requested by email - to distinguish people towards the end of life,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Palliative%20care%20codes/res176-palliative-and-end-of-life-care.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+117,PANCREATIC_DISEASE,Pancreatic disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>pancreatic disease,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+118,PARALYSIS,Paralysis (other than stroke),Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+119,PARKINSONS,Parkinson's disease,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+120,PCOS,Polycystic ovary syndrome,Long-term condition,,2023-06-01,Added following PPI review 20/03/2023,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Polycystic_ovarian_syndrome_PCOS_birm_cam_v2,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,Added following PPI review,Missing BBO Class
+12,PEPTIC_ULCER,Peptic ulcer,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>peptic ulcer,2023-08-25,SF - requested by email - PPI recommendation,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Peptic%20ulcer/phenotype_PH1091_ver_2385_concepts_20230719T122902.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES
+13,PERSONALITY_DISORDERS,Personality disorders,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>personality disorders,2023-08-25,SF - requested by email - PPI recommendation,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Personality%20disorders/res38-personality-disorder.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,Missing BBO Class
+183,PHYSICAL_ACTIVITY_ADVICE,Physical activity advice,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+173,PHYSICAL_EXAMINATION,Physical examination,Workload indicator (investigation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+121,PLASMACELL,Plasmacell,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>plasmacell,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/plasmacell_neoplasm_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,N/A
+122,PMR,Polymyalgia rheumatica,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>polymyalgia rheumatica
+
+Alt label: PMR",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Polymyalgiarheumatica_MM,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,Missing BBO Class
+124,PRIMARY_LUNG_CANCER,Primary lung cancer ,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>primary lung cancer,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Primary%20lung%20cancer_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+125,PROSTATE_CANCER,Prostate cancer ,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>prostate cancer,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/PrimaryProstateCa_prevalence_120421_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+126,PROSTATE_DISORDERS,Prostate disorders,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Benign%20Prostate%20Hyperplasia_birm_cam/Benign%20Prostate%20Hyperplasia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Benign%20Prostate%20Hyperplasia_birm_cam/Benign%20Prostate%20Hyperplasia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Benign%20Prostate%20Hyperplasia_birm_cam/Benign%20Prostate%20Hyperplasia_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES
+128,PSORIASIS,Psoriasis,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Psoriasis_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,Missing BBO Class
+129,PSORIASIS_ARTHRITIS,Psoriatic Arthritis ,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>psoriasis arthritis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/PsoriaticArthritis2021_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+130,PTSD,Post-traumatic stress disorder,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>post traumatic stress disorder
+
+Alt label: PTSD",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+131,PVD,Peripheral vascular disease,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>peripheral vascular disease
+
+Alt label: PVD",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. Hanlon_et_al.pdf
+2. Ho_et_al.pdf","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+200,REDUCED_APPETITE,Reduced appetite,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+201,REDUCED_PHYSICAL_STRENGTH,Reduced physical strength,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+132,RENAL_TRANSPLANT,Renal transplant,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Renal%20transplant_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Renal%20transplant_MM_birm_cam/Renal%20transplant_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Renal%20transplant_MM_birm_cam/Renal%20transplant_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Renal%20transplant_MM_birm_cam/Renal%20transplant_MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10_renal%20transplant_SimonFraser-icd10-renal-transplant-2456f582.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+174,RESPIRATORY_TESTS,Respiratory tests,Workload indicator (investigation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+134,RHEUMATOID_ARTHRITIS,Rheumatoid Arthritis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>rheumatiod arthritis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/RheumatoidArthritis_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,from this list we are adding the following codes: D106./D1060/D1061/D1062/D1063/D1065/D106z/Dyu12/F4221
+163,SADNESS,Sadness,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+135,SCHIZOPHRENIA,Schizophrenia,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>schizophrenia,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Ho_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+154,SELF_ADVOCACY_SELF_HELP,Self advocacy self help,Workload indicator (accumulation),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+14,SELF_HARM,Self harm,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>self harm
+
+MAY NEED TO ALSO ACCOUNT FOR A SEFL HARM EVENT",2023-08-25,SF - requested by email - PPI recommendation,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Self%20harm/res41-self-harm.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,YES WITH ISSUES
+42,SEPARATION_DIVORCE,Separation / divorce,Workload indicator (adapting),,2023-10-10,RH/MZ - requested by email based on WP3 burden indicators ,YES,QUERY BY CODING LIST,https://www.opencodelists.org/,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-divorce-7e31d0c4.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-divorce-and-separation-49602a64.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators
+2023-11-17: Codes cannot be currently processed JAKUB to investigate",YES
+164,SHAME,Shame,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,PENDING,PENDING,PENDING,PENDING,,
+5,SICKLE_CELL,Sickle cell disease,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>haematological disorder>sickle cell disease,2023-07-01,SF - requested by email,YES,QUERY BY CODING LIST,https://www.opencodelists.org/codelist/opensafely/sickle-cell-disease/2020-04-14/#full-list,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10%20Sickle%20cellSimonFraser-icd10-sickle-cell-59289be2.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/sickle_cell_disease.xlsx",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,"Rare disease; SF happy to include in V1; Problem is it's V3 readcode and only V2 in SAIL, need to translate to V2 through a mapping or manually as there's only 25 codes.
+Update: from this list we are adding the following codes: D106./D1060/D1061/D1062/D1063/D1065/D106z/Dyu12/F4221 2023-11-17: Codes not present in JSON file JAKUB to investigate.",N/A
+138,SKIN_CANCER,Skin Cancer,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>skin cancer,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/SkinCancer_200421_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+25,SLEEP_PROBLEMS,Sleep problems,Workload indicator (symptom),,2023-08-25,SF - requested by email- symptom example from WP1 QES Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/ + WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Sleep%20problems/res175-sleep-problems.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/blob/main/codes/NEW%20BURDEN%20CODELISTS/Symptoms/SLEEP_PROBLEMS.xlsx",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.
+2023-09-22: SF confirmed to useand proceed to processing.
+2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+184,SMOKING_STATUS_ASSESSED,Smoking status assessed,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+26,STRESS,Stress-related problems,Workload indicator (emotional),,2023-08-25,SF - requested by email- symptom example from WP1 QES Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/+ WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Stress/res175-stress.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/blob/main/codes/NEW%20BURDEN%20CODELISTS/Emotions/STRESS.xlsx?ref_type=heads",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.
+2023-09-22: SF confirmed to useand proceed to processing.
+2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",N/A
+139,STROKE,Stroke ,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,"1. https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/StrokeUnspecified_Bham_CAM
+2. https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Stroke_Haemrgic_Bham_CAM","https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES
+166,SUICIDAL,Suicidal,Workload indicator (emotional),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+203,SWEATING,Sweating,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+141,SYSTEMIC_LUPUS_ERYTHEMATOSUS,Systemic Lupus Erythematosus,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>automimmune disease>systemic lupus erythematosus,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Systemic_lupus_erythematosus_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,Missing BBO Class
+142,SYSTEMIC_SCLEROSIS,Systemic sclerosis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>automimmune disease>systemic sclerosis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Systemic_Sclerosis_MM_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,YES WITH ISSUES
+143,THALASSAEMIA,Thalassaemia,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>haematological disorder>thalassaemia,2023-06-01,Added following PPI review 20/03/2023,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Thalassaemia_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Thalassaemia_birm_cam/Thalassaemia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Thalassaemia_birm_cam/Thalassaemia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Thalassaemia_birm_cam/Thalassaemia_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10_thalassaemia_SimonFraser-icd10-thalassaemia-401928ad.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,Added following PPI review,N/A
+145,TIA,Transient ischaemic attack,Long-term condition,,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/TIA_Bham_CAM,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_IMRD.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+204,TIREDNESS,Tiredness,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+6,TUBERCULOSIS,Tuberculosis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>tuberculosis,2023-07-01,SF - requested by email,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Tuberculosis/phenotype_PH87_ver_174_concepts_20230719T113229.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,"Complicated -> not included in V1; SF not sure how we are considering this, may take to the clinicians.
+2023-08: reviewed by the clinicians and agreed to use. CSV provided. ",
+44,UNEMPLOYED,Unemployed,Workload indicator (financial),,2023-10-11,RH/MZ - requested by email based on WP3 burden indicators . SF split into two groups on 11/10 /23 - unemployed and work change,YES,QUERY BY CODING LIST,https://www.opencodelists.org/,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-unemployed-00e490bb.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-unemployed-11dbc40e.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,"2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.
+2023-11-17: Codes not present in JSON file JAKUB to investigate.",YES
+205,UNINTENTIONAL_WEIGHT_LOSS,Unintentional weight loss,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+206,URINARY_INCONTINENCE,Urinary incontinence,Workload indicator (symptom),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+15,URINARY_STONES,Urinary tract stones,Long-term condition,,2023-08-25,SF - requested by email - PPI recommendation,YES,QUERY BY CODING LIST,https://clinicalcodes.rss.mhs.man.ac.uk/,https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Urinary%20tract%20stones/phenotype_PH331_ver_662_concepts_20230719T121545.csv,COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+146,VIRAL_HEPATITIS,Viral hepatitis,Long-term condition,entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>viral hepatitis,2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,1. Hanlon_et_al.pdf,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv",COMPLETE,USE,COMPLETE,SENSITIVE,YES,YES,,
+147,VTD,Venous thrombotic disease,Long-term condition,"entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>venous thrombotic disease
+
+Alt label: VTD",2023-06-01,SF - based on Hanlon and Ho paper prior to PHEN process,YES,QUERY BY CODING LIST,https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/VTEnoPE_birm_cam,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/VTEnoPE_birm_cam/VTEnoPE_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/VTEnoPE_birm_cam/VTEnoPE_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/VTEnoPE_birm_cam/VTEnoPE_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10%20VTE_SimonFraser-icd10-venous-thromboembolism-0b47824d.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,YES,,
+185,WEIGHT_LOSS_ADVICE,Weight loss advice,Workload indicator (adapting),,2024-03-11,Finalised burden/work codes from WP1,YES,QUERY BY CODING LIST,WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians,https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb,COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,,
+45,WORK_CHANGE,Change in work situation,Workload indicator (adapting),,2023-10-11,RH/MZ - requested by email based on WP3 burden indicators . SF split into two groups on 11/10 /23 - unemployed and work change,YES,QUERY BY CODING LIST,https://www.opencodelists.org/,"https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-work-change-67d51d85.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-work-change-43faaa78.csv",COMPLETE,USE,COMPLETE,COMPLETE,YES,NO,2023-11-17: Codes not present in JSON file JAKUB to investigate,YES