diff --git a/PHEN_assign_v3.json b/PHEN_assign_v3.json
index dce8f506aaf1c1a2f0a50bafbf42688b23c6d83c..6693f4ce421d912dbb9e41017a5a12cabca9ef0e 100644
--- a/PHEN_assign_v3.json
+++ b/PHEN_assign_v3.json
@@ -1,3782 +1,10052 @@
{
"concept_sets": {
- "file":"PHEN_summary_working.csv",
- "version":"3.2.10",
- "omop":{
- "vocabulary_id":"MELDB",
- "vocabulary_name":"Multidisciplinary Ecosystem to study Lifecourse Determinants and Prevention of Early-onset Burdensome Multimorbidity",
- "vocabulary_reference":"https://www.it-innovation.soton.ac.uk/projects/meldb"
+ "version": "3.2.10",
+ "omop": {
+ "vocabulary_id": "MELDB",
+ "vocabulary_name": "Multidisciplinary Ecosystem to study Lifecourse Determinants and Prevention of Early-onset Burdensome Multimorbidity",
+ "vocabulary_reference": "https://www.it-innovation.soton.ac.uk/projects/meldb"
},
- "columns":{
- "concept_set_name":"CONCEPT NAME ",
- "concept_set_status":"AGREED",
- "metadata":["CONCEPT TYPE"]
- }
+ "concept_set": [
+ {
+ "concept_set_name": "ABDO_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "18",
+ "CONCEPT DESCRIPTION": "Abdominal pain",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Abdominal%20pain/res176-abdominal-pain.csv ",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.\\r\\n2023-09-22: SF confirmed to use and proceed to processing.",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "ACCEPTANCE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "155",
+ "CONCEPT DESCRIPTION": "Acceptance",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "PENDING",
+ "IMPORTED_SAIL": "PENDING",
+ "READv2_CODE": "PENDING",
+ "ICD10_CODE": "PENDING",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ADDISONS_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "51",
+ "CONCEPT DESCRIPTION": "Addison's disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>addisons disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_AURUM.csv,\\r\\nhttps://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_GOLD.csv,\\r\\n https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_ICD10.csv,\\r\\n https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Addison_Disease_birm_cam/Addison_Disease_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "ADHERENCE_PROBLEMS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "186",
+ "CONCEPT DESCRIPTION": "Adherence problems",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "YES",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ADMISSION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "168",
+ "CONCEPT DESCRIPTION": "Admission",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "AGE_ONSET",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "39",
+ "CONCEPT DESCRIPTION": "Age at onset of first condition",
+ "CONCEPT TYPE": "Workload indicator (accumulation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "DIRECT SELECTION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed a derived age on entry to cohort variable, along the week of birth is already available and these can be used by the project team to calculate age at different times in the study as required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed a derived age on entry to cohort variable, along the week of birth is already available and these can be used by the project team to calculate age at different times in the study as required in the data, which is already available in SAIL.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "ALCOHOL_ADVICE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "175",
+ "CONCEPT DESCRIPTION": "Alcohol advice",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "yes",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ALL_MEDICATIONS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "148",
+ "CONCEPT DESCRIPTION": "All medications",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-12-01",
+ "REQUEST REASON ": "Discussed at WP2 meeting. In order to allow identification of all drugs used by each cohort member",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "http://dx.doi.org/10.1136/jech-2021-217090\\r\\n\\r\\nwith amendments made to source by project team",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/blob/main/codes/Medication%20code%20source/WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx?ref_type=heads",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-12-01: Agreed through discussion on GitLab issue (https://git.soton.ac.uk/meld/meldb-external/wp3/proxy-burdensome-indicators/-/issues/13) from SF that the Wilkinson et al. paper is to be used for this concept, with the known limitation it may be missing Read codes for drugs which were not included/in scope of the cited paper. \\r\\n\\r\\n2024-02-20: From GitLab Issue (https://git.soton.ac.uk/meld/meldb-external/wp2/-/issues/71) regenerated file using a new list with the additions on Wilkinson Code and Drug Category metadata (https://sotonac.sharepoint.com/:x:/r/teams/NIHR_AIM_MELD-B_Research_Collaboration/_layouts/15/Doc.aspx?sourcedoc=%7BBC0FDB60-739B-4FB9-BE4F-61783439C67D%7D&file=WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx&action=default&mobileredirect=true)",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ANAEMIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "54",
+ "CONCEPT DESCRIPTION": "Anaemia",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>haematological disorder>anaemia",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/B12deficiency_birm_cam/B12deficiency_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Folate%20deficiency_birm_cam/Folate%20deficiency_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Folate%20deficiency_birm_cam/Folate%20deficiency_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Folate%20deficiency_birm_cam/Folate%20deficiency_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ANEURYSM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "55",
+ "CONCEPT DESCRIPTION": "Aneurysm",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>aneurysm",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "ANGER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "156",
+ "CONCEPT DESCRIPTION": "Anger",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ANKYLOSING_SPONDYLITIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "56",
+ "CONCEPT DESCRIPTION": "Ankylosing spondylitis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>ankylosing spondylitis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/AnkylosingSpondylitis_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ANXIETY",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "57",
+ "CONCEPT DESCRIPTION": "Anxiety",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>anxiety\\r\\n\\r\\nNEED TO CONSIDER HOW TO CLASSIFY THE DIFFERENT ASPECTS OF THIS e.g. Occurrant>Process CAN ALSO BE A SYMPTOM AND AN ANXIETY ATTACK CAN BE AN EVENT....",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Anxiety_birm_cam/Anxiety_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ARRHYTHMIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "58",
+ "CONCEPT DESCRIPTION": "Arrhythmia",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>arrhythmia",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "ASTHMA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "59",
+ "CONCEPT DESCRIPTION": "Asthma",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>asthma",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Asthma_PUSHAsthma/Asthma_PUSHAsthma_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "ATOPIC_ECZEMA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "60",
+ "CONCEPT DESCRIPTION": "Atopic Eczema",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>skin disease>atopic eczema\\r\\n\\r\\nNOTE: dermo disorder is NOT currently a class in the BBO - need to add it",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/AtopicEczema_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AtopicEczema_birm_cam/AtopicEczema_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "AUTISM_AND_ADHD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "61",
+ "CONCEPT DESCRIPTION": "Autism and ADHD",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>autism and ADHD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ADHD_mm_birm_cam/ADHD_mm_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autism_birm_cam/Autism_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "AVG_ACCRUAL_TIME",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "40",
+ "CONCEPT DESCRIPTION": "Average interval between accrual of conditions",
+ "CONCEPT TYPE": "Workload indicator (accumulation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, which is already available in SAIL.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "BENEFITS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "167",
+ "CONCEPT DESCRIPTION": "Benefits",
+ "CONCEPT TYPE": "Workload indicator (financial)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "BEREAVEMENT",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "176",
+ "CONCEPT DESCRIPTION": "Bereavement",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "BIPOLAR_DISORDER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "62",
+ "CONCEPT DESCRIPTION": "Bipolar Disorder",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>bipolar disorder",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Bipolar_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bipolar_birm_cam/Bipolar_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "BLINDNESS_AND_LOW_VISION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "63",
+ "CONCEPT DESCRIPTION": "Blindness and low vision",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>eye disease>blindness and low vision",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Visual_Impairment_Birm_Cam/Visual_Impairment_Birm_Cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "BLOOD_PRESSURE_READING",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "170",
+ "CONCEPT DESCRIPTION": "Blood pressure reading",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "no",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "BMI",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "149",
+ "CONCEPT DESCRIPTION": "BMI (Body Mass Index)",
+ "CONCEPT TYPE": "TBC",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-12-01",
+ "REQUEST REASON ": "Discussed at WP2 and WP4 meeting.",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "FUNCTION",
+ "FUNCTION.1": "TBC - paper pending publication to be added once published",
+ "CODING LIST": "Agreed to use the existing method/function - will be used and implemented but does not require processing by the MELD-B team into a machine readable standard format.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "BREAST_CANCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "64",
+ "CONCEPT DESCRIPTION": "Breast Cancer",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>breast cancer",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/BreastCancer_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/BreastCancer_birm_cam/BreastCancer_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "BREATHLESSNESS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "189",
+ "CONCEPT DESCRIPTION": "Breathlessness",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "BRONCHIECSTASIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "65",
+ "CONCEPT DESCRIPTION": "Bronchiectasis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>bronchiecstasis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "CARE_COORDINATION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "152",
+ "CONCEPT DESCRIPTION": "Care coordination",
+ "CONCEPT TYPE": "Workload indicator (accumulation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "CHEST_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "190",
+ "CONCEPT DESCRIPTION": "Chest pain",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "CHRONIC_BACK_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "66",
+ "CONCEPT DESCRIPTION": "Chronic back pain",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "NOTE: need to consider this (and all PAIN conditions) carefully, as this one could be a Musculoskeletal Disorder, but it could also be a Neurlogical Disorder resulting from e.g. Sciatica; or it could be an Inflammatory Condition caused by e.g. Ankylosing Spondylitis; or it could be caused by poor posture, reptitive strain, stress, anxiety....etc",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Chronicbackpain_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "CHRONIC_FATIGUE_SYNDROME",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "67",
+ "CONCEPT DESCRIPTION": "Chronic Fatigue Syndrome",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "Alt Name 1: CFS\\r\\nAlt Name 2: myalgic encephalomyelitis (ME)\\r\\n\\r\\nNOTE: CFS has 'unknown etiology' loosely falling under 'Neurological Disorders', which is NOT currently a class within the BBO -we need to add it to a new class 'Unkown Etiology'",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/ChronicFatigueSyndromeMM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "Disagregate - DONE",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "CHRONIC_LIVER_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "68",
+ "CONCEPT DESCRIPTION": "Chronic liver disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>chronic liver disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/NAFLD_birm_cam/NAFLD_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/NAFLD_birm_cam/NAFLD_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/NAFLD_birm_cam/NAFLD_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "CHRONIC_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "69",
+ "CONCEPT DESCRIPTION": "Chronic pain",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "NOTE: see Chronic Back Pain - ADDITONALLY this is often considered as a symptom rather than a condition",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Disagregate- DONE",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "CHRONIC_SINUSITIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "70",
+ "CONCEPT DESCRIPTION": "Chronic sinusitis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>chronic sinusitis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "NO"
+ }
+ },
+ {
+ "concept_set_name": "CKD_STAGE3_5",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "71",
+ "CONCEPT DESCRIPTION": "Chronic kidney disease stage 3_5",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>urogenital disorder>chronic kidney disease (Stage 3-5)\\r\\n\\r\\nAlt Name: CKD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/CKDstage3to5_Bham_CAM",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "COELIAC_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "72",
+ "CONCEPT DESCRIPTION": "Coeliac disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>coeliac disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "Added following PPI review 20/03/2023",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Coeliac_disease_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Added following PPI review",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "COLON_CANCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "73",
+ "CONCEPT DESCRIPTION": "Colon Cancer",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>colon cancer",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Colon_cancer__bham_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Colon_cancer__bham_cam/Colon_cancer__bham_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "CONFUSED",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "191",
+ "CONCEPT DESCRIPTION": "Confused",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "74",
+ "CONCEPT DESCRIPTION": "Congenital disease and chromosomal abnormalities",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>congential disease>congential disease and chromosomal abnormalities",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "COPD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "75",
+ "CONCEPT DESCRIPTION": "Chronic obstructive pulmonary disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>respiratory disease>chronic obstructive pulmonary disease\\r\\n\\r\\nAlt Name: COPD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/COPD_birm_cam/COPD_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "CORONARY_HEART_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "76",
+ "CONCEPT DESCRIPTION": "Coronary heart disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>coronary heart disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "COUGH",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "192",
+ "CONCEPT DESCRIPTION": "Cough",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "CVD_EVENTS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "9",
+ "CONCEPT DESCRIPTION": "Cardiovascular events",
+ "CONCEPT TYPE": "Outcome event",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - to explore an examplar 'outcome measure'",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Cardiovascular%20events%20(ICD10)/res52-cardiovascular-events-icd10.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "NO",
+ "ICD10_CODE": "YES",
+ "NOTES": "2023-11-17 - Code cannot currently be PROCESSED = COMPLETE as no mappings from ICD10 to Read v2 exist, pending confirmation from clinical team on next steps.",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "CYSTIC_FIBROSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "77",
+ "CONCEPT DESCRIPTION": "Cystic fibrosis ",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>cystic fibrosis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DEAFNESS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "78",
+ "CONCEPT DESCRIPTION": "Deafness",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>ear disease>deafness",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SevereDeafHearingLoss_birm_cam/SevereDeafHearingLoss_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DEMENTIA_ALZHEIMER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "79",
+ "CONCEPT DESCRIPTION": "Dementia_alzheimer",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>dementia and alzheimer",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Alzheimers_birm_cam/Alzheimers_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/DementiaOther_birm_cam/DementiaOther_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DEPRESSION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "80",
+ "CONCEPT DESCRIPTION": "Depression",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>depression",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Depression_birm_cam/Depression_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DEPRIVATION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "29",
+ "CONCEPT DESCRIPTION": "Socioeconomic deprivation \\u2013 people in IMD quintiles 1&2",
+ "CONCEPT TYPE": "Workload indicator (financial)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "DIRECT SELECTION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed to use WIMD 2019 which is already available in the cohort table, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that the WIMD 2019 linked to the LSOA 2011 will be used to look at residence of individual at cohort entry date, which is already available in the cohort table in SAIL.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "DESPAIR",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "157",
+ "CONCEPT DESCRIPTION": "Despair",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DIABETES_T1",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "82",
+ "CONCEPT DESCRIPTION": "Diabetes Type 1 ",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine diseases>diabetes>diabetes type 1",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Type1DM_11_3_21_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type1DM_11_3_21_birm_cam/Type1DM_11_3_21_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "DIABETES_T2",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "83",
+ "CONCEPT DESCRIPTION": "Diabetes Type 2",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine diseases>diabetes>diabetes type 2",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Type2Diabetes_11_3_21_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Type2Diabetes_11_3_21_birm_cam/Type2Diabetes_11_3_21_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "DIABETIC_RETINOPATHY",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "84",
+ "CONCEPT DESCRIPTION": "Diabetic retinopathy",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>eye disease>diabetic retinopathy",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/diabetic_retinopathy_090121_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10_diabetic%20retinopathy_SimonFraser-icd10-diabetic-retinopathy-0dfa4243.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "DIALYSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "85",
+ "CONCEPT DESCRIPTION": "Dialysis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Dialysis%20MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Dialysis%20MM_birm_cam/Dialysis%20MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Dialysis%20MM_birm_cam/Dialysis%20MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Dialysis%20MM_birm_cam/Dialysis%20MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10%20Dialysis_%20SimonFraser-dialysis-3d6668b7%20.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "DID_NOT_ATTEND",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "17",
+ "CONCEPT DESCRIPTION": "Did not attend appointment",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - from discussions with Frances Mair",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Non-attendance%20codes/res201-did-not-attend-appointment.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DIET_ADVICE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "177",
+ "CONCEPT DESCRIPTION": "Diet advice",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DIFFICULTY_WITH_MEDICATION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "187",
+ "CONCEPT DESCRIPTION": "Difficulty with medication",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DIVERTICULAR_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "86",
+ "CONCEPT DESCRIPTION": "Diverticular disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>diverticular disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/diverticular_disease_birm_cam/diverticular_disease_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DNA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "169",
+ "CONCEPT DESCRIPTION": "Did not attend",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DRUG_ADVERSE_EFFECT",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "188",
+ "CONCEPT DESCRIPTION": "Drug adverse effect",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DRUG_ALCOHOL_MISUSE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "87",
+ "CONCEPT DESCRIPTION": "Drug or alcohol misuse",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "SUGGEST: entity>occurrent>process>behaviour>harmful behaviour>burdensome harmful behaviour>drug and alcohol misuse\\r\\n\\r\\nNEEDS DISCUSSION",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SubstanceMisuse_birm_cam/SubstanceMisuse_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DRUG_INTERACTION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "153",
+ "CONCEPT DESCRIPTION": "Drug interaction",
+ "CONCEPT TYPE": "Workload indicator (accumulation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "DRUG_MONITORING",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "171",
+ "CONCEPT DESCRIPTION": "Drug monitoring",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "EATING_DISORDERS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "88",
+ "CONCEPT DESCRIPTION": "Eating disorders",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>eating disorders",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EatingDisorders_birm_cam/EatingDisorders_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "EHLERS_DANLOS_SYNDROME",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "89",
+ "CONCEPT DESCRIPTION": "Ehlers Danlos Syndrome",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>ehlers danlos syndrome",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/EhlersDanlosSyndrome3_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "EMBARRASSMENT",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "158",
+ "CONCEPT DESCRIPTION": "Embarrassment",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "EMPLOYMENT_PROBLEM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "178",
+ "CONCEPT DESCRIPTION": "Employment problem",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "ENDOMETRIOSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "90",
+ "CONCEPT DESCRIPTION": "Endometriosis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "EPILEPSY",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "91",
+ "CONCEPT DESCRIPTION": "Epilepsy",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Epilepsy_birm_cam/Epilepsy_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "FALLS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "19",
+ "CONCEPT DESCRIPTION": "Falls",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Falls/res178-fall.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Falls/res202-falls-outcome.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "FATIGUE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "20",
+ "CONCEPT DESCRIPTION": "Fatigue",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Fatigue/res175-fatigue.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "FEAR",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "159",
+ "CONCEPT DESCRIPTION": "Fear",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "FIBROMYALGIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "92",
+ "CONCEPT DESCRIPTION": "Fibromyalgia",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>fibromyalgia",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Fibromyalgia_Bham_CAM",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "FRAILTY_PRIMARY_CARE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "27",
+ "CONCEPT DESCRIPTION": "Frailty from the eFI in primary care",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "FUNCTION",
+ "FUNCTION.1": "https://academic.oup.com/ageing/article/48/6/922/5576114",
+ "CODING LIST": "Agreed to use the existing method/function - will be used and implemented but does not require processing by the MELD-B team into a machine readable standard format.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-09-08: Confirmation on whether to use the existing method and code base, or does it need to be PROCESSED (and define which 1 or more look back periods to run the method on?)\\r\\n2023-09-22: Confirmed in WP2 meeting for this and methods/functions that are established and published already, where the clinical group confirm they are suitable then we will use the existing method/function without reprocessing the code lists in MELD-B. Agreed to USE and will proceed to extraction within the TRE/data.\\r\\n2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "FRAILTY_SECONDARY_CARE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "28",
+ "CONCEPT DESCRIPTION": "Frailty from the HFRS in secondary care",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "FUNCTION",
+ "FUNCTION.1": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5946808/",
+ "CODING LIST": "Agreed to use the existing method/function - will be used and implemented but does not require processing by the MELD-B team into a machine readable standard format.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-09-08: Confirmation on whether to use the existing method and code base, or does it need to be PROCESSED (and define which 1 or more look back periods to run the method on?)\\r\\n2023-09-22: Confirmed in WP2 meeting for this and methods/functions that are established and published already, where the clinical group confirm they are suitable then we will use the existing method/function without reprocessing the code lists in MELD-B. Agreed to USE and will proceed to extraction within the TRE/data.\\r\\n2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "FRUSTRATION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "160",
+ "CONCEPT DESCRIPTION": "Frustration",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "pending",
+ "IMPORTED_SAIL": "PENDING",
+ "READv2_CODE": "PENDING",
+ "ICD10_CODE": "PENDING",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "GAIT_PROBLEMS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "194",
+ "CONCEPT DESCRIPTION": "Gait problems",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "GI_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "195",
+ "CONCEPT DESCRIPTION": "Gi pain",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "GLAUCOMA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "93",
+ "CONCEPT DESCRIPTION": "Glaucoma",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>eye disease>glaucoma",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "GOUT",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "94",
+ "CONCEPT DESCRIPTION": "Gout",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>gout",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Gout_MM_birm_cam/Gout_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "GUILT",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "161",
+ "CONCEPT DESCRIPTION": "Guilt",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HEADACHE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "21",
+ "CONCEPT DESCRIPTION": "Headache",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Headache/res175-headache.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.\\r\\n2023-09-22: SF confirmed to useand proceed to processing.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "HEART_VALVE_DISORDERS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "96",
+ "CONCEPT DESCRIPTION": "Heart valve disorders",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>heart valve disorders",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ValvularDiseases_BhaM_CAM/ValvularDiseases_BhaM_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HF",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "97",
+ "CONCEPT DESCRIPTION": "Heart failure",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>heart failure\\r\\n\\r\\nAlt label: HF\\r\\n\\r\\nNOTE: Heart Failure could be classified as an Event rather than a condition",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HF_Bham_CAM_Final/HF_Bham_CAM_Final_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HIVAIDS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "98",
+ "CONCEPT DESCRIPTION": "HIV/AIDS",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>HIV aids",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/HIVaids_birm_cam/HIVaids_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "SENSITIVE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HOUSING_PROBLEM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "179",
+ "CONCEPT DESCRIPTION": "Housing problem",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HYPERTENSION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "99",
+ "CONCEPT DESCRIPTION": "Hypertension",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>hypertension",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HYPERTHYROIDISM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "100",
+ "CONCEPT DESCRIPTION": "Hyperthyroidism",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>hyperthyroidism",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Hyperthyroidism%20V2_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hyperthyroidism%20V2_birm_cam/Hyperthyroidism%20V2_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "HYPOTHYROIDISM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "101",
+ "CONCEPT DESCRIPTION": "Hypothyroidism",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>metabolic and endocrine disease>hypothyroidism",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Hypothyroidism%20draft%20V1_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hypothyroidism%20draft%20V1_birm_cam/Hypothyroidism%20draft%20V1_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "IBD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "102",
+ "CONCEPT DESCRIPTION": "Inflammatory bowel disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>infammatory bowel disease\\r\\n\\r\\nAlt label: IBD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Crohns_disease_birm_cam/Crohns_disease_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Ulcerative_colitis_birm_cam/Ulcerative_colitis_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "IBS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "103",
+ "CONCEPT DESCRIPTION": "Irritable bowel syndrome",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>irrititable bowel syndrome\\r\\n\\r\\nAlt label: IBS",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "ILD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "104",
+ "CONCEPT DESCRIPTION": "Inflammatory lung disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>inflammatory lung disease\\r\\n\\r\\nAlt label: ILD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "Added following PPI review 20/03/2023",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/ILD_sh_20092020_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Added following PPI review",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "INCONTINENCE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "22",
+ "CONCEPT DESCRIPTION": "Incontinence",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Incontinence/res11-incontinence.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "LEARNING_DISABILITY",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "107",
+ "CONCEPT DESCRIPTION": "Learning disability",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>learning disability",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Learningdisability_birm_cam/Learningdisability_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "LEUKAEMIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "108",
+ "CONCEPT DESCRIPTION": "Leukaemia",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>leaukaemia",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/leukaemia_prevalence_birm_cam\\r\\n",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "LIFESTYLE_ADVICE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "180",
+ "CONCEPT DESCRIPTION": "Lifestyle advice",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "LONELINESS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "47",
+ "CONCEPT DESCRIPTION": "Loneliness",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://www.opencodelists.org/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_IMRD.csv,\\thttps://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-loneliness-4c12ea5a.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-loneliness-5d0a1dad.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators 2023-11-17 - Codes cannot be currectly processed JAKUB to investigate",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "LONGCOVID",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "7",
+ "CONCEPT DESCRIPTION": "LONG COVID",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>long covid",
+ "DATE ADDED ": "2023-07-01",
+ "REQUEST REASON ": "SF - requested by email",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "FUNCTION",
+ "FUNCTION.1": "https://www.adruk.org/news-publications/publications-reports/data-insight-clinical-coding-and-capture-of-long-covid-a-cohort-study-in-wales-using-linked-health-and-demographic-data-824/",
+ "CODING LIST": "https://sotonac.sharepoint.com/:x:/r/teams/MELD-Coding/_layouts/15/Doc.aspx?sourcedoc=%7BBA07F810-6D4D-4586-80AA-5EF4E84E0CAF%7D&file=LongCovid_codes.xlsx&action=default&mobileredirect=true",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Need a solution, raised many times. Problem is we have SNOMED rather than Readcode, does not exist in readcode, how has it been coded in SAIL beyond 2020. Ask ashley. https://git.soton.ac.uk/meld/meldb-external/wp2/-/issues/44\\r\\nUpdate: LONG COVID phenotype confirmed by Ashley developed by ADR Wales programme as set of read codes available in SAIL. Shared within SAIL with Roberta, will be shared here as soon as published to be reviewed by MELD clinical group and agreed for use or any changes.\\r\\n2023-09-08: Report published, codes agreed and to be implemented, to be created as CSV.\\r\\n2023-09-22: Confirmed in WP02 meeting to use existing code list, at the moment covers ICD-10 and local Read codes for EMIS and VISION gp system vendors - further work may be needed when accessing CPRD if other gp system vendors are being used or to add SNOMED or other coding classifications.",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "LOW_SELF_ESTEEM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "162",
+ "CONCEPT DESCRIPTION": "Low self esteem",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "LTCS_TOTAL",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "41",
+ "CONCEPT DESCRIPTION": "Total number of long-term conditions (at different time points)",
+ "CONCEPT TYPE": "Workload indicator (accumulation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Confirmed using the existing list of phenotypes agreed and available, and the records extracted for each phenotype this can be derived / calculated as required in the data, which is already available in SAIL.",
+ "Relation to Ontology": "NO"
+ }
+ },
+ {
+ "concept_set_name": "LYMPHOMA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "110",
+ "CONCEPT DESCRIPTION": "Lymphoma",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>lymphoma",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/lymphoma_prevalence_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "MARFAN_SYNDROME",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "111",
+ "CONCEPT DESCRIPTION": "Marfan Syndrome",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>marfan syndrome",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/MarfanSyndrome_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "MEMORY_PROBLEMS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "197",
+ "CONCEPT DESCRIPTION": "Memory problems",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "MENIERES_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "112",
+ "CONCEPT DESCRIPTION": "Meniere\\u2019s disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>ear disease>menieres disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Menieresdisease_birm_cam/Menieresdisease_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Menieresdisease_birm_cam/Menieresdisease_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Menieresdisease_birm_cam/Menieresdisease_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "METASTATIC_CANCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "113",
+ "CONCEPT DESCRIPTION": "Metastatic cancer",
+ "CONCEPT TYPE": "Long-term condition - see WP3 list as this NOT considered a Condition (it is a Stage of Progression of Cancer) - needs discussion",
+ "CONCEPT ONTOLOGY CLASS": "entity>occurant>process>stage of progression>metastatic (stage IV)\\r\\n\\r\\nAlso need classes for Stage I, II & III",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/MetastaticCancer_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MetastaticCancer_birm_cam/MetastaticCancer_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "MOBILITY_PROBLEMS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "198",
+ "CONCEPT DESCRIPTION": "Mobility problems",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "MONITORING",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "172",
+ "CONCEPT DESCRIPTION": "Monitoring",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "MOTOR_NEURONE_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "10",
+ "CONCEPT DESCRIPTION": "Motor neurone disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - PPI recommendation",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Motor%20neurone%20disease/phenotype_PH62_ver_124_concepts_20230719T112819.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "MSK_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "23",
+ "CONCEPT DESCRIPTION": "Musculoskeletal pain",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Musculoskeletal%20pain/res175-msk-pain.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "MULTIPLE_SCLEROSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "114",
+ "CONCEPT DESCRIPTION": "Multiple sclerosis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/MS_120421_birm_cam/MS_120421_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "NAUSEA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "199",
+ "CONCEPT DESCRIPTION": "Nausea",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "NEEDS_HELP",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "181",
+ "CONCEPT DESCRIPTION": "Needs help",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "NEUROPATH_PAIN",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "24",
+ "CONCEPT DESCRIPTION": "Neuropathic pain",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Neuropathic%20pain/res55-neuropathic_pain.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "NOT_COPING",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "182",
+ "CONCEPT DESCRIPTION": "Not coping",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "NUM_AE_APP",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "34",
+ "CONCEPT DESCRIPTION": "Number of A&E (emergency department) appointments",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all ED attendance records are extracted from EDDS and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all ED attendance records from EDDS will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "NUM_BLOOD_TESTS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "36",
+ "CONCEPT DESCRIPTION": "Number of blood tests ",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all blood tests are extracted from WRRS and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all blood tests from WRRS will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "NUM_GP_APP",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "33",
+ "CONCEPT DESCRIPTION": "Number of GP appointments (if possible by type i.e. in person/virtual/phone)",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all GP event records are extracted from WLGP and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all GP event records from WLGP will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "NUM_HOSPITAL_ADM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "35",
+ "CONCEPT DESCRIPTION": "Number of admissions to hospital (by type if possible \\u2013 emergency vs. elective",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all hospital admission records are extracted from PEDW and OPDW and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all hospital admission records from PEDW and OPDW will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "NUM_HOSPITAL_APP_SPECIAL",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "32",
+ "CONCEPT DESCRIPTION": "Number of different kinds of hospital appointments",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all hospital admission records are extracted from PEDW and OPDW and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all hospital admission records from PEDW and OPDW will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "NUM_HOSPITAL_APP_TOTAL",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "31",
+ "CONCEPT DESCRIPTION": "Number and frequency of hospital appointments",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all hospital admission records are extracted from PEDW and OPDW and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all hospital admission records from PEDW and OPDW will be extracted and can be used by the project team to calculate the numbers required, which is already available in SAIL.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "NUM_MEDICATIONS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "30",
+ "CONCEPT DESCRIPTION": "Number of medications",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed to extract all medications from the WLGP data rather than defining a specific list of defined medication phenotypes which is already available in SAIL, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-10-10: Agreed that all prescribed medications from the WLGP will be extracted rather than a specific list of defined medications agreed at this time, which is already available in SAIL.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "NUM_OTHER_INVESTIGATIONS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "37",
+ "CONCEPT DESCRIPTION": "Number of other investigations ",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "NO",
+ "FUNCTION": "AGGREGATION",
+ "FUNCTION.1": "nan",
+ "CODING LIST": "Agreed all records are extracted from available data sources and these can be used by the project team to calculate numbers required in the data, does not require any further processing by the MELD-B team.",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "nan",
+ "IMPORTED_SAIL": "nan",
+ "READv2_CODE": "nan",
+ "ICD10_CODE": "nan",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators (https://git.soton.ac.uk/meld/meldb-external/wp2/-/issues/56).\\r\\n2023-12-11: Confirmed will be explored by RSF tool as a future aspiration, in addition to aggregation of existing concepts.",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "OBESITY",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "49",
+ "CONCEPT DESCRIPTION": "This is specifically obesity, not overweight.",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-11",
+ "REQUEST REASON ": "SF, EH and RF in discussion",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://www.opencodelists.org/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-obesity-19f403f0.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-obesity-3050b72f.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "We will probably want to supplement this later by our own analyses of BMI using weight and height in the cohort. This currently includes codes for obesity.\\r\\n2023-11-17: Codes cannot be currently processed JAKUB to investigate",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "OCD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "11",
+ "CONCEPT DESCRIPTION": "Obsessive compulsive disorder",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>obsessive compulsive disorder\\r\\n\\r\\nAlt label: OCD",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - PPI recommendation",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Obsessive%20Compulsive%20Disorder/phenotype_PH223_ver_446_concepts_20230719T114228.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "OSTEOARTHRITIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "115",
+ "CONCEPT DESCRIPTION": "Osteoarthritis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>osteoarthritis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "OSTEOPOROSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "116",
+ "CONCEPT DESCRIPTION": "Osteoporosis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>osteoporosis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Osteoporosis_birm_cam/Osteoporosis_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "PAIN_MEDICATIONS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "150",
+ "CONCEPT DESCRIPTION": "Drugs that are painkillers",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-12-13",
+ "REQUEST REASON ": "Discussion between WP1 and WP3 2023/12/13 agreed new method for identifying pain from medication use",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "From Hanlon paper (1. Hanlon_et_al.pdf ) but modified by MELD-B clinicians to add a few additional medications",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Medication%20code%20source/Pain%20medications/Read_codes_for_pain_drugs.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-12-13: All of these drugs are used for pain. To identify the presence of pain use all drugs in this list and all drugs in the 'PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS' if either is prescribed 4 or more times in a calendar year",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "151",
+ "CONCEPT DESCRIPTION": "Drugs that are antiepileptic drugs that are also used for pain",
+ "CONCEPT TYPE": "Workload indicator (medication)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-12-13",
+ "REQUEST REASON ": "Discussion between WP1 and WP3 2023/12/13 agreed new method for identifying pain from medication use",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf ",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Medication%20code%20source/Pain%20medications/Read_codes_for_pain_drugs_if_no_epilepsy_diagnosis.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-12-13: To ensure that these drugs are being prescribed for pain it is necessary to make sure that there is no diagnosis of EPILEPSY in the person's record (i.e. NOT those with a diagnosis of epilepsy from row 91 in this spreadsheet). To identify the presence of pain use all drugs in this list used in people without epilepsy and all drugs in the 'PAIN_MEDICATIONS' if either is prescribed 4 or more times in a calendar year",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PALLIATIVE_CARE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "16",
+ "CONCEPT DESCRIPTION": "Palliative care",
+ "CONCEPT TYPE": "Workload indicator (health services)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - to distinguish people towards the end of life",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Palliative%20care%20codes/res176-palliative-and-end-of-life-care.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PANCREATIC_DISEASE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "117",
+ "CONCEPT DESCRIPTION": "Pancreatic disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>pancreatic disease",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "PARALYSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "118",
+ "CONCEPT DESCRIPTION": "Paralysis (other than stroke)",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "PARKINSONS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "119",
+ "CONCEPT DESCRIPTION": "Parkinson's disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Parkinsons_birm_cam/Parkinsons_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "PCOS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "120",
+ "CONCEPT DESCRIPTION": "Polycystic ovary syndrome",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "Added following PPI review 20/03/2023",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Polycystic_ovarian_syndrome_PCOS_birm_cam_v2",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam/Polycystic%20ovarian%20syndrome%20PCOS_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "Added following PPI review",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "PEPTIC_ULCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "12",
+ "CONCEPT DESCRIPTION": "Peptic ulcer",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>digestive disease>peptic ulcer",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - PPI recommendation",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Peptic%20ulcer/phenotype_PH1091_ver_2385_concepts_20230719T122902.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "PERSONALITY_DISORDERS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "13",
+ "CONCEPT DESCRIPTION": "Personality disorders",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>personality disorders",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - PPI recommendation",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Personality%20disorders/res38-personality-disorder.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "PHYSICAL_ACTIVITY_ADVICE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "183",
+ "CONCEPT DESCRIPTION": "Physical activity advice",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PHYSICAL_EXAMINATION",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "173",
+ "CONCEPT DESCRIPTION": "Physical examination",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PLASMACELL",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "121",
+ "CONCEPT DESCRIPTION": "Plasmacell",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>plasmacell",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/plasmacell_neoplasm_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PMR",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "122",
+ "CONCEPT DESCRIPTION": "Polymyalgia rheumatica",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>polymyalgia rheumatica\\r\\n\\r\\nAlt label: PMR",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Polymyalgiarheumatica_MM",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Polymyalgiarheumatica_MM/Polymyalgiarheumatica_MM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "PRIMARY_LUNG_CANCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "124",
+ "CONCEPT DESCRIPTION": "Primary lung cancer ",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>primary lung cancer",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Primary%20lung%20cancer_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Primary%20lung%20cancer_birm_cam/Primary%20lung%20cancer_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "PROSTATE_CANCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "125",
+ "CONCEPT DESCRIPTION": "Prostate cancer ",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>prostate cancer",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/PrimaryProstateCa_prevalence_120421_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PrimaryProstateCa_prevalence_120421_birm_cam/PrimaryProstateCa_prevalence_120421_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "PROSTATE_DISORDERS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "126",
+ "CONCEPT DESCRIPTION": "Prostate disorders",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Benign%20Prostate%20Hyperplasia_birm_cam/Benign%20Prostate%20Hyperplasia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Benign%20Prostate%20Hyperplasia_birm_cam/Benign%20Prostate%20Hyperplasia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Benign%20Prostate%20Hyperplasia_birm_cam/Benign%20Prostate%20Hyperplasia_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "PSORIASIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "128",
+ "CONCEPT DESCRIPTION": "Psoriasis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Psoriasis_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Psoriasis_birm_cam/Psoriasis_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "PSORIASIS_ARTHRITIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "129",
+ "CONCEPT DESCRIPTION": "Psoriatic Arthritis ",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>psoriasis arthritis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/PsoriaticArthritis2021_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "PTSD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "130",
+ "CONCEPT DESCRIPTION": "Post-traumatic stress disorder",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>post traumatic stress disorder\\r\\n\\r\\nAlt label: PTSD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PTSD_TLC_V2/PTSD_TLC_V2_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "PVD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "131",
+ "CONCEPT DESCRIPTION": "Peripheral vascular disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>peripheral vascular disease\\r\\n\\r\\nAlt label: PVD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf \\r\\n2. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/PVD_Bham_CAM/PVD_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "REDUCED_APPETITE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "200",
+ "CONCEPT DESCRIPTION": "Reduced appetite",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "REDUCED_PHYSICAL_STRENGTH",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "201",
+ "CONCEPT DESCRIPTION": "Reduced physical strength",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "RENAL_TRANSPLANT",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "132",
+ "CONCEPT DESCRIPTION": "Renal transplant",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Renal%20transplant_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Renal%20transplant_MM_birm_cam/Renal%20transplant_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Renal%20transplant_MM_birm_cam/Renal%20transplant_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Renal%20transplant_MM_birm_cam/Renal%20transplant_MM_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10_renal%20transplant_SimonFraser-icd10-renal-transplant-2456f582.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "RESPIRATORY_TESTS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "174",
+ "CONCEPT DESCRIPTION": "Respiratory tests",
+ "CONCEPT TYPE": "Workload indicator (investigation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "RHEUMATOID_ARTHRITIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "134",
+ "CONCEPT DESCRIPTION": "Rheumatoid Arthritis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>musculoskeletal disease>rheumatiod arthritis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/RheumatoidArthritis_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/RheumatoidArthritis_MM_birm_cam/RheumatoidArthritis_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "from this list we are adding the following codes: D106./D1060/D1061/D1062/D1063/D1065/D106z/Dyu12/F4221"
+ }
+ },
+ {
+ "concept_set_name": "SADNESS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "163",
+ "CONCEPT DESCRIPTION": "Sadness",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SCHIZOPHRENIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "135",
+ "CONCEPT DESCRIPTION": "Schizophrenia",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>schizophrenia",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Ho_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SchizophreniaMM/SchizophreniaMM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "SELF_ADVOCACY_SELF_HELP",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "154",
+ "CONCEPT DESCRIPTION": "Self advocacy self help",
+ "CONCEPT TYPE": "Workload indicator (accumulation)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SELF_HARM",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "14",
+ "CONCEPT DESCRIPTION": "Self harm",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>pathological disposition>burdensome pathological disposition>mental and behavioural disorder>self harm\\r\\n\\r\\nMAY NEED TO ALSO ACCOUNT FOR A SEFL HARM EVENT",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - PPI recommendation",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Self%20harm/res41-self-harm.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "SEPARATION_DIVORCE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "42",
+ "CONCEPT DESCRIPTION": "Separation / divorce",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-10",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators ",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://www.opencodelists.org/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-divorce-7e31d0c4.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-divorce-and-separation-49602a64.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators\\r\\n2023-11-17: Codes cannot be currently processed JAKUB to investigate",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "SHAME",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "164",
+ "CONCEPT DESCRIPTION": "Shame",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "PENDING",
+ "IMPORTED_SAIL": "PENDING",
+ "READv2_CODE": "PENDING",
+ "ICD10_CODE": "PENDING",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SICKLE_CELL",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "5",
+ "CONCEPT DESCRIPTION": "Sickle cell disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>haematological disorder>sickle cell disease",
+ "DATE ADDED ": "2023-07-01",
+ "REQUEST REASON ": "SF - requested by email",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://www.opencodelists.org/codelist/opensafely/sickle-cell-disease/2020-04-14/#full-list",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10%20Sickle%20cellSimonFraser-icd10-sickle-cell-59289be2.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/sickle_cell_disease.xlsx",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Rare disease; SF happy to include in V1; Problem is it's V3 readcode and only V2 in SAIL, need to translate to V2 through a mapping or manually as there's only 25 codes. \\r\\nUpdate: from this list we are adding the following codes: D106./D1060/D1061/D1062/D1063/D1065/D106z/Dyu12/F4221 2023-11-17: Codes not present in JSON file JAKUB to investigate.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SKIN_CANCER",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "138",
+ "CONCEPT DESCRIPTION": "Skin Cancer",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cancer>skin cancer",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/SkinCancer_200421_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/SkinCancer_200421_birm_cam/SkinCancer_200421_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SLEEP_PROBLEMS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "25",
+ "CONCEPT DESCRIPTION": "Sleep problems",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/ + WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Sleep%20problems/res175-sleep-problems.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/blob/main/codes/NEW%20BURDEN%20CODELISTS/Symptoms/SLEEP_PROBLEMS.xlsx",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.\\r\\n2023-09-22: SF confirmed to useand proceed to processing.\\r\\n2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SMOKING_STATUS_ASSESSED",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "184",
+ "CONCEPT DESCRIPTION": "Smoking status assessed",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "STRESS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "26",
+ "CONCEPT DESCRIPTION": "Stress-related problems",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email- symptom example from WP1 QES Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/+ WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Symptom%20code%20lists/Stress/res175-stress.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/blob/main/codes/NEW%20BURDEN%20CODELISTS/Emotions/STRESS.xlsx?ref_type=heads",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-09-08: SF confirmed that the clinical view would be that this would need to be recurrent or persistent. Pending confirmation of if this is AGREED to use or do not use.\\r\\n2023-09-22: SF confirmed to useand proceed to processing.\\r\\n2023-10-10: Requested as part of the WP3 burdensome indicators document and discussion, already in the proposed list seen here.",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "STROKE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "139",
+ "CONCEPT DESCRIPTION": "Stroke ",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/StrokeUnspecified_Bham_CAM\\r\\n2. https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Stroke_Haemrgic_Bham_CAM",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/StrokeUnspecified_Bham_CAM/StrokeUnspecified_Bham_CAM_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Stroke_Haemrgic_Bham_CAM/Stroke_Haemrgic_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "SUICIDAL",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "166",
+ "CONCEPT DESCRIPTION": "Suicidal",
+ "CONCEPT TYPE": "Workload indicator (emotional)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SWEATING",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "203",
+ "CONCEPT DESCRIPTION": "Sweating",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "SYSTEMIC_LUPUS_ERYTHEMATOSUS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "141",
+ "CONCEPT DESCRIPTION": "Systemic Lupus Erythematosus",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>automimmune disease>systemic lupus erythematosus",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Systemic_lupus_erythematosus_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_lupus_erythematosus_MM_birm_cam/Systemic_lupus_erythematosus_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "Missing BBO Class"
+ }
+ },
+ {
+ "concept_set_name": "SYSTEMIC_SCLEROSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "142",
+ "CONCEPT DESCRIPTION": "Systemic sclerosis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>automimmune disease>systemic sclerosis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Systemic_Sclerosis_MM_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Systemic_Sclerosis_MM_birm_cam/Systemic_Sclerosis_MM_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "YES WITH ISSUES"
+ }
+ },
+ {
+ "concept_set_name": "THALASSAEMIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "143",
+ "CONCEPT DESCRIPTION": "Thalassaemia",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>haematological disorder>thalassaemia",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "Added following PPI review 20/03/2023",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/Thalassaemia_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Thalassaemia_birm_cam/Thalassaemia_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Thalassaemia_birm_cam/Thalassaemia_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Thalassaemia_birm_cam/Thalassaemia_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10_thalassaemia_SimonFraser-icd10-thalassaemia-401928ad.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Added following PPI review",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "TIA",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "145",
+ "CONCEPT DESCRIPTION": "Transient ischaemic attack",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/TIA_Bham_CAM",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/TIA_Bham_CAM/TIA_Bham_CAM_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "TIREDNESS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "204",
+ "CONCEPT DESCRIPTION": "Tiredness",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "TUBERCULOSIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "6",
+ "CONCEPT DESCRIPTION": "Tuberculosis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>tuberculosis",
+ "DATE ADDED ": "2023-07-01",
+ "REQUEST REASON ": "SF - requested by email",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Tuberculosis/phenotype_PH87_ver_174_concepts_20230719T113229.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "Complicated -> not included in V1; SF not sure how we are considering this, may take to the clinicians. \\r\\n2023-08: reviewed by the clinicians and agreed to use. CSV provided. ",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "UNEMPLOYED",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "44",
+ "CONCEPT DESCRIPTION": "Unemployed",
+ "CONCEPT TYPE": "Workload indicator (financial)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-11",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators . SF split into two groups on 11/10 /23 - unemployed and work change",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://www.opencodelists.org/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-unemployed-00e490bb.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-unemployed-11dbc40e.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-10-10: Provided on document by WP3 following discussion meeting on burdensomness indicators.\\r\\n2023-11-17: Codes not present in JSON file JAKUB to investigate.",
+ "Relation to Ontology": "YES"
+ }
+ },
+ {
+ "concept_set_name": "UNINTENTIONAL_WEIGHT_LOSS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "205",
+ "CONCEPT DESCRIPTION": "Unintentional weight loss",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "URINARY_INCONTINENCE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "206",
+ "CONCEPT DESCRIPTION": "Urinary incontinence",
+ "CONCEPT TYPE": "Workload indicator (symptom)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "URINARY_STONES",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "15",
+ "CONCEPT DESCRIPTION": "Urinary tract stones",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-08-25",
+ "REQUEST REASON ": "SF - requested by email - PPI recommendation",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://clinicalcodes.rss.mhs.man.ac.uk/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/ClinicalCodes.org%20from%20the%20University%20of%20Manchester/Urinary%20tract%20stones/phenotype_PH331_ver_662_concepts_20230719T121545.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "VIRAL_HEPATITIS",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "146",
+ "CONCEPT DESCRIPTION": "Viral hepatitis",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>infectious disease>viral hepatitis",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "1. Hanlon_et_al.pdf",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/hanlon/Read_codes_for_diagnoses.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "SENSITIVE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "VTD",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "147",
+ "CONCEPT DESCRIPTION": "Venous thrombotic disease",
+ "CONCEPT TYPE": "Long-term condition",
+ "CONCEPT ONTOLOGY CLASS": "entity>continuant>specifically depenedent continuant>realizable entity>disposition>disease>burdensome long-term condition>cardiovascular disease>venous thrombotic disease\\r\\n\\r\\nAlt label: VTD",
+ "DATE ADDED ": "2023-06-01",
+ "REQUEST REASON ": "SF - based on Hanlon and Ho paper prior to PHEN process",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://github.com/THINKINGGroup/phenotypes/tree/main/Medical%20conditions/VTEnoPE_birm_cam",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/VTEnoPE_birm_cam/VTEnoPE_birm_cam_CPRD_AURUM.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/VTEnoPE_birm_cam/VTEnoPE_birm_cam_CPRD_GOLD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/GitHub_TG_repository/VTEnoPE_birm_cam/VTEnoPE_birm_cam_IMRD.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/ICD10_codes/ICD10%20VTE_SimonFraser-icd10-venous-thromboembolism-0b47824d.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "YES",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "WEIGHT_LOSS_ADVICE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "185",
+ "CONCEPT DESCRIPTION": "Weight loss advice",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2024-03-11",
+ "REQUEST REASON ": "Finalised burden/work codes from WP1",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "WP1 and Alex Dregan derived codes from Opencodes and in CPRD. All checked by at least two clinicians",
+ "CODING LIST": "https://sotonac.sharepoint.com/teams/MELD-Coding/Shared%20Documents/Forms/AllItems.aspx?csf=1&web=1&e=FArNcj&cid=026b92bf%2De630%2D438d%2D9cd5%2De58433cb11c1&FolderCTID=0x012000EE813FE43877A14DB14D1F0C7052CB7C&id=%2Fteams%2FMELD%2DCoding%2FShared%20Documents%2FGeneral%2FMELD%2DB%20Concepts%2FCode%20list%20Sources%2FNEW%20BURDEN%20CODELISTS&viewid=5b58cd36%2D2b54%2D42a1%2Db056%2Db528104431cb",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "nan",
+ "Relation to Ontology": "nan"
+ }
+ },
+ {
+ "concept_set_name": "WORK_CHANGE",
+ "concept_set_status": "AGREED",
+ "metadata": {
+ "#": "45",
+ "CONCEPT DESCRIPTION": "Change in work situation",
+ "CONCEPT TYPE": "Workload indicator (adapting)",
+ "CONCEPT ONTOLOGY CLASS": "nan",
+ "DATE ADDED ": "2023-10-11",
+ "REQUEST REASON ": "RH/MZ - requested by email based on WP3 burden indicators . SF split into two groups on 11/10 /23 - unemployed and work change",
+ "SOURCE INFO": "YES",
+ "FUNCTION": "QUERY BY CODING LIST",
+ "FUNCTION.1": "https://www.opencodelists.org/",
+ "CODING LIST": "https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SNOMED_codes/SimonFraser-snomed-work-change-67d51d85.csv, https://git.soton.ac.uk/meld/meldb-external/phenotype/-/tree/main/codes/Opencodelists/SimonFraser-work-change-43faaa78.csv",
+ "CONSIDERED": "COMPLETE",
+ "PROCESSED": "COMPLETE",
+ "IMPORTED_SAIL": "COMPLETE",
+ "READv2_CODE": "YES",
+ "ICD10_CODE": "NO",
+ "NOTES": "2023-11-17: Codes not present in JSON file JAKUB to investigate",
+ "Relation to Ontology": "YES"
+ }
+ }
+ ]
},
- "codes":[
+ "codes": [
{
- "folder":"codes/Medication code source",
- "description":"Medication Codes - downloaded 15/12/23",
+ "folder": "codes/Medication code source",
+ "description": "Medication Codes - downloaded 15/12/23",
"files": [
{
- "file":"WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx",
- "excel_sheet":"in",
- "columns":{
- "read2_code":"READCODE",
- "metadata":["DESCRIPTION",
- "WILK_READCODE",
- "DRUG_CATEGORY"]
- },
- "concept_set": ["ALL_MEDICATIONS"]
+ "file": "WP02_SAIL_WILK_matched_drug_codes_with_categories.xlsx",
+ "excel_sheet": "in",
+ "columns": {
+ "read2_code": "READCODE",
+ "metadata": [
+ "DESCRIPTION",
+ "WILK_READCODE",
+ "DRUG_CATEGORY"
+ ]
+ },
+ "concept_set": [
+ "ALL_MEDICATIONS"
+ ]
},
{
- "file":"Pain medications/Read_codes_for_pain_drugs_if_no_epilepsy_diagnosis.csv",
- "columns":{
- "read2_code":"readcode",
- "atc_code":"atc_code"
+ "file": "Pain medications/Read_codes_for_pain_drugs_if_no_epilepsy_diagnosis.csv",
+ "columns": {
+ "read2_code": "readcode",
+ "atc_code": "atc_code"
},
- "concept_set": ["PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS"]
+ "concept_set": [
+ "PAIN_MEDICATIONS_IF_NO_EPILEPSY_DIAGNOSIS"
+ ]
},
{
- "file":"Pain medications/Read_codes_for_pain_drugs.csv",
- "columns":{
- "read2_code":"readcode"
+ "file": "Pain medications/Read_codes_for_pain_drugs.csv",
+ "columns": {
+ "read2_code": "readcode"
},
- "concept_set": ["PAIN_MEDICATIONS"]
+ "concept_set": [
+ "PAIN_MEDICATIONS"
+ ]
}
]
},
{
- "folder":"codes/ClinicalCodes.org from the University of Manchester",
- "description":"Simon's Clinical codes - downloaded 16/11/23",
+ "folder": "codes/ClinicalCodes.org from the University of Manchester",
+ "description": "Simon's Clinical codes - downloaded 16/11/23",
"files": [
{
- "file":"Symptom code lists/Abdominal pain/res176-abdominal-pain.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Abdominal pain/res176-abdominal-pain.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["ABDO_PAIN"]
+ "concept_set": [
+ "ABDO_PAIN"
+ ]
},
{
- "file":"Cardiovascular events (ICD10)/res52-cardiovascular-events-icd10.csv",
- "columns":{
- "icd10_code":"code",
- "metadata":["description"]
+ "file": "Cardiovascular events (ICD10)/res52-cardiovascular-events-icd10.csv",
+ "columns": {
+ "icd10_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["CVD_EVENTS"]
+ "concept_set": [
+ "CVD_EVENTS"
+ ]
},
{
- "file":"Non-attendance codes/res201-did-not-attend-appointment.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Non-attendance codes/res201-did-not-attend-appointment.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["DID_NOT_ATTEND"]
+ "concept_set": [
+ "DID_NOT_ATTEND"
+ ]
},
{
- "file":"Symptom code lists/Falls/res178-fall.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Falls/res178-fall.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["FALLS"]
+ "concept_set": [
+ "FALLS"
+ ]
},
{
- "file":"Symptom code lists/Falls/res202-falls-outcome.csv",
- "actions":{
- "split_col":"coding_system",
- "codes_col":"code"
- },
- "columns":{
- "icd10_code":"ICD-10",
- "cprd_code":"CPRD_product_code",
- "metadata":["description"]
- },
- "concept_set": ["FALLS"]
+ "file": "Symptom code lists/Falls/res202-falls-outcome.csv",
+ "actions": {
+ "split_col": "coding_system",
+ "codes_col": "code"
+ },
+ "columns": {
+ "icd10_code": "ICD-10",
+ "cprd_code": "CPRD_product_code",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "FALLS"
+ ]
},
{
- "file":"Symptom code lists/Fatigue/res175-fatigue.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Fatigue/res175-fatigue.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["FATIGUE"]
+ "concept_set": [
+ "FATIGUE"
+ ]
},
{
- "file":"Symptom code lists/Headache/res175-headache.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Headache/res175-headache.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["HEADACHE"]
+ "concept_set": [
+ "HEADACHE"
+ ]
},
{
- "file":"Symptom code lists/Incontinence/res11-incontinence.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Incontinence/res11-incontinence.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["INCONTINENCE"]
+ "concept_set": [
+ "INCONTINENCE"
+ ]
},
{
- "file":"Motor neurone disease/phenotype_PH62_ver_124_concepts_20230719T112819.csv",
- "actions":{
- "split_col":"coding_system",
- "codes_col":"code"
- },
- "columns":{
- "read2_code":"Read codes v2",
- "med_code":"Med codes",
- "icd10_code":"ICD10 codes",
- "metadata":["description"]
- },
- "concept_set": ["MOTOR_NEURONE_DISEASE"]
+ "file": "Motor neurone disease/phenotype_PH62_ver_124_concepts_20230719T112819.csv",
+ "actions": {
+ "split_col": "coding_system",
+ "codes_col": "code"
+ },
+ "columns": {
+ "read2_code": "Read codes v2",
+ "med_code": "Med codes",
+ "icd10_code": "ICD10 codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "MOTOR_NEURONE_DISEASE"
+ ]
},
{
- "file":"Symptom code lists/Musculoskeletal pain/res175-msk-pain.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Musculoskeletal pain/res175-msk-pain.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["MSK_PAIN"]
+ "concept_set": [
+ "MSK_PAIN"
+ ]
},
{
- "file":"Symptom code lists/Neuropathic pain/res55-neuropathic_pain.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Neuropathic pain/res55-neuropathic_pain.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["NEUROPATH_PAIN"]
+ "concept_set": [
+ "NEUROPATH_PAIN"
+ ]
},
{
- "file":"Obsessive Compulsive Disorder/phenotype_PH223_ver_446_concepts_20230719T114228.csv",
- "actions":{
- "split_col":"coding_system",
- "codes_col":"code"
- },
- "columns":{
- "read2_code":"Read codes v2",
- "med_code":"Med codes",
- "icd10_code":"ICD10 codes",
- "metadata":["description"]
- },
- "concept_set": ["OCD"]
+ "file": "Obsessive Compulsive Disorder/phenotype_PH223_ver_446_concepts_20230719T114228.csv",
+ "actions": {
+ "split_col": "coding_system",
+ "codes_col": "code"
+ },
+ "columns": {
+ "read2_code": "Read codes v2",
+ "med_code": "Med codes",
+ "icd10_code": "ICD10 codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "OCD"
+ ]
},
{
- "file":"Palliative care codes/res176-palliative-and-end-of-life-care.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Palliative care codes/res176-palliative-and-end-of-life-care.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["PALLIATIVE_CARE"]
+ "concept_set": [
+ "PALLIATIVE_CARE"
+ ]
},
{
- "file":"Peptic ulcer/phenotype_PH1091_ver_2385_concepts_20230719T122902.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Peptic ulcer/phenotype_PH1091_ver_2385_concepts_20230719T122902.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["PEPTIC_ULCER"]
+ "concept_set": [
+ "PEPTIC_ULCER"
+ ]
},
{
- "file":"Personality disorders/res38-personality-disorder.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Personality disorders/res38-personality-disorder.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["PERSONALITY_DISORDERS"]
+ "concept_set": [
+ "PERSONALITY_DISORDERS"
+ ]
},
{
- "file":"Self harm/res41-self-harm.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Self harm/res41-self-harm.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["SELF_HARM"]
+ "concept_set": [
+ "SELF_HARM"
+ ]
},
{
- "file":"Symptom code lists/Sleep problems/res175-sleep-problems.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Sleep problems/res175-sleep-problems.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["SLEEP_PROBLEMS"]
+ "concept_set": [
+ "SLEEP_PROBLEMS"
+ ]
},
{
- "file":"Symptom code lists/Stress/res175-stress.csv",
- "columns":{
- "read2_code":"code",
- "metadata":["description"]
+ "file": "Symptom code lists/Stress/res175-stress.csv",
+ "columns": {
+ "read2_code": "code",
+ "metadata": [
+ "description"
+ ]
},
- "concept_set": ["STRESS"]
+ "concept_set": [
+ "STRESS"
+ ]
},
{
- "file":"Tuberculosis/phenotype_PH87_ver_174_concepts_20230719T113229.csv",
- "actions":{
- "split_col":"coding_system",
- "codes_col":"code"
- },
- "columns":{
- "read2_code":"Read codes v2",
- "med_code":"Med codes",
- "icd10_code":"ICD10 codes",
- "metadata":["description"]
- },
- "concept_set": ["TUBERCULOSIS"]
+ "file": "Tuberculosis/phenotype_PH87_ver_174_concepts_20230719T113229.csv",
+ "actions": {
+ "split_col": "coding_system",
+ "codes_col": "code"
+ },
+ "columns": {
+ "read2_code": "Read codes v2",
+ "med_code": "Med codes",
+ "icd10_code": "ICD10 codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "TUBERCULOSIS"
+ ]
},
{
- "file":"Urinary tract stones/phenotype_PH331_ver_662_concepts_20230719T121545.csv",
- "actions":{
- "split_col":"coding_system",
- "codes_col":"code"
- },
- "columns":{
- "read2_code":"Read codes v2",
- "med_code":"Med codes",
- "icd10_code":"ICD10 codes",
- "metadata":["description"]
- },
- "concept_set": ["URINARY_STONES"]
+ "file": "Urinary tract stones/phenotype_PH331_ver_662_concepts_20230719T121545.csv",
+ "actions": {
+ "split_col": "coding_system",
+ "codes_col": "code"
+ },
+ "columns": {
+ "read2_code": "Read codes v2",
+ "med_code": "Med codes",
+ "icd10_code": "ICD10 codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "URINARY_STONES"
+ ]
}
]
},
{
- "folder":"codes/Opencodelists",
- "description":"Simon's Open Code Lists- downloaded 19/10/23",
+ "folder": "codes/Opencodelists",
+ "description": "Simon's Open Code Lists- downloaded 19/10/23",
"files": [
{
- "file":"sickle_cell_disease.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "read3_code":"Read Code"
+ "file": "sickle_cell_disease.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "read3_code": "Read Code"
},
- "concept_set": ["SICKLE_CELL"]
+ "concept_set": [
+ "SICKLE_CELL"
+ ]
},
{
- "file":"SimonFraser-loneliness-5d0a1dad.csv",
- "columns":{
- "read3_code":"code"
+ "file": "SimonFraser-loneliness-5d0a1dad.csv",
+ "columns": {
+ "read3_code": "code"
},
- "concept_set": ["LONELINESS"]
+ "concept_set": [
+ "LONELINESS"
+ ]
},
{
- "file":"SimonFraser-mobility-problems-174143fa.csv",
- "columns":{
- "read3_code":"code"
+ "file": "SimonFraser-mobility-problems-174143fa.csv",
+ "columns": {
+ "read3_code": "code"
}
},
{
- "file":"SimonFraser-obesity-3050b72f.csv",
- "columns":{
- "read3_code":"code"
+ "file": "SimonFraser-obesity-3050b72f.csv",
+ "columns": {
+ "read3_code": "code"
},
- "concept_set": ["OBESITY"]
+ "concept_set": [
+ "OBESITY"
+ ]
},
{
- "file":"SimonFraser-divorce-and-separation-49602a64.csv",
- "columns":{
- "read3_code":"code"
+ "file": "SimonFraser-divorce-and-separation-49602a64.csv",
+ "columns": {
+ "read3_code": "code"
},
- "concept_set": ["SEPARATION_DIVORCE"]
+ "concept_set": [
+ "SEPARATION_DIVORCE"
+ ]
},
{
- "file":"SimonFraser-unemployed-11dbc40e.csv",
- "columns":{
- "read3_code":"code"
+ "file": "SimonFraser-unemployed-11dbc40e.csv",
+ "columns": {
+ "read3_code": "code"
},
- "concept_set": ["UNEMPLOYED"]
+ "concept_set": [
+ "UNEMPLOYED"
+ ]
},
{
- "file":"SimonFraser-work-change-43faaa78.csv",
- "columns":{
- "read3_code":"code"
+ "file": "SimonFraser-work-change-43faaa78.csv",
+ "columns": {
+ "read3_code": "code"
},
- "concept_set": ["WORK_CHANGE"]
+ "concept_set": [
+ "WORK_CHANGE"
+ ]
},
{
- "file":"SNOMED_codes/SimonFraser-snomed-loneliness-4c12ea5a.csv",
- "columns":{
- "snomed_code":"code"
+ "file": "SNOMED_codes/SimonFraser-snomed-loneliness-4c12ea5a.csv",
+ "columns": {
+ "snomed_code": "code"
},
- "concept_set": ["LONELINESS"]
+ "concept_set": [
+ "LONELINESS"
+ ]
},
{
- "file":"SNOMED_codes/SimonFraser-snomed-mobility-problems-33037725.csv",
- "columns":{
- "snomed_code":"code"
+ "file": "SNOMED_codes/SimonFraser-snomed-mobility-problems-33037725.csv",
+ "columns": {
+ "snomed_code": "code"
}
},
{
- "file":"SNOMED_codes/SimonFraser-snomed-obesity-19f403f0.csv",
- "columns":{
- "snomed_code":"code"
+ "file": "SNOMED_codes/SimonFraser-snomed-obesity-19f403f0.csv",
+ "columns": {
+ "snomed_code": "code"
},
- "concept_set": ["OBESITY"]
+ "concept_set": [
+ "OBESITY"
+ ]
},
{
- "file":"SNOMED_codes/SimonFraser-snomed-divorce-7e31d0c4.csv",
- "columns":{
- "snomed_code":"code"
+ "file": "SNOMED_codes/SimonFraser-snomed-divorce-7e31d0c4.csv",
+ "columns": {
+ "snomed_code": "code"
},
- "concept_set": ["SEPARATION_DIVORCE"]
+ "concept_set": [
+ "SEPARATION_DIVORCE"
+ ]
},
{
- "file":"SNOMED_codes/SimonFraser-snomed-unemployed-00e490bb.csv",
- "columns":{
- "snomed_code":"code"
+ "file": "SNOMED_codes/SimonFraser-snomed-unemployed-00e490bb.csv",
+ "columns": {
+ "snomed_code": "code"
},
- "concept_set": ["UNEMPLOYED"]
+ "concept_set": [
+ "UNEMPLOYED"
+ ]
},
{
- "file":"SNOMED_codes/SimonFraser-snomed-work-change-67d51d85.csv",
- "columns":{
- "snomed_code":"code"
+ "file": "SNOMED_codes/SimonFraser-snomed-work-change-67d51d85.csv",
+ "columns": {
+ "snomed_code": "code"
},
- "concept_set": ["WORK_CHANGE"]
+ "concept_set": [
+ "WORK_CHANGE"
+ ]
},
-
-
{
- "file":"ICD10_codes/ICD10 Dialysis_ SimonFraser-dialysis-3d6668b7 .csv",
- "columns":{
- "icd10_code":"code"
+ "file": "ICD10_codes/ICD10 Dialysis_ SimonFraser-dialysis-3d6668b7 .csv",
+ "columns": {
+ "icd10_code": "code"
},
- "concept_set": ["DIALYSIS"]
+ "concept_set": [
+ "DIALYSIS"
+ ]
},
{
- "file":"ICD10_codes/ICD10 Sickle cellSimonFraser-icd10-sickle-cell-59289be2.csv",
- "columns":{
- "icd10_code":"code"
+ "file": "ICD10_codes/ICD10 Sickle cellSimonFraser-icd10-sickle-cell-59289be2.csv",
+ "columns": {
+ "icd10_code": "code"
},
- "concept_set": ["SICKLE_CELL"]
+ "concept_set": [
+ "SICKLE_CELL"
+ ]
},
{
- "file":"ICD10_codes/ICD10 VTE_SimonFraser-icd10-venous-thromboembolism-0b47824d.csv",
- "columns":{
- "icd10_code":"code"
+ "file": "ICD10_codes/ICD10 VTE_SimonFraser-icd10-venous-thromboembolism-0b47824d.csv",
+ "columns": {
+ "icd10_code": "code"
},
- "concept_set": ["VTD"]
+ "concept_set": [
+ "VTD"
+ ]
},
{
- "file":"ICD10_codes/ICD10_diabetic retinopathy_SimonFraser-icd10-diabetic-retinopathy-0dfa4243.csv",
- "columns":{
- "icd10_code":"code"
+ "file": "ICD10_codes/ICD10_diabetic retinopathy_SimonFraser-icd10-diabetic-retinopathy-0dfa4243.csv",
+ "columns": {
+ "icd10_code": "code"
},
- "concept_set": ["DIABETIC_RETINOPATHY"]
+ "concept_set": [
+ "DIABETIC_RETINOPATHY"
+ ]
},
{
- "file":"ICD10_codes/ICD10_renal transplant_SimonFraser-icd10-renal-transplant-2456f582.csv",
- "columns":{
- "icd10_code":"code"
+ "file": "ICD10_codes/ICD10_renal transplant_SimonFraser-icd10-renal-transplant-2456f582.csv",
+ "columns": {
+ "icd10_code": "code"
},
- "concept_set": ["RENAL_TRANSPLANT"]
+ "concept_set": [
+ "RENAL_TRANSPLANT"
+ ]
},
{
- "file":"ICD10_codes/ICD10_thalassaemia_SimonFraser-icd10-thalassaemia-401928ad.csv",
- "columns":{
- "icd10_code":"code"
+ "file": "ICD10_codes/ICD10_thalassaemia_SimonFraser-icd10-thalassaemia-401928ad.csv",
+ "columns": {
+ "icd10_code": "code"
},
- "concept_set": ["THALASSAEMIA"]
+ "concept_set": [
+ "THALASSAEMIA"
+ ]
}
]
},
{
- "folder":"codes/hanlon",
- "description":"Hanlon's Paper Code Lists",
+ "folder": "codes/hanlon",
+ "description": "Hanlon's Paper Code Lists",
"files": [
{
- "file":"Read_codes_for_diagnoses.csv",
- "actions":{
+ "file": "Read_codes_for_diagnoses.csv",
+ "actions": {
"divide_col": "MMCode"
},
- "columns":{
- "read2_code":"Read Code"
- },
- "concept_set_categories":{
- "13":["ANXIETY"],
- "22":["ARRHYTHMIA"],
- "5":["ASTHMA"],
- "33":["BLINDNESS_AND_LOW_VISION"],
- "37":["BRONCHIECSTASIS"],
- "41":["CHRONIC_FATIGUE_SYNDROME"],
- "34":["CHRONIC_SINUSITIS"],
- "12":["COPD"],
- "6":["CORONARY_HEART_DISEASE"],
- "11":["DEAFNESS"],
- "28":["DEMENTIA_ALZHEIMER"],
- "3":["DEPRESSION"],
- "21":["DIVERTICULAR_DISEASE"],
- "16":["DRUG_ALCOHOL_MISUSE"],
- "17":["DRUG_ALCOHOL_MISUSE"],
- "36":["EATING_DISORDERS"],
- "27":["EPILEPSY"],
- "26":["GLAUCOMA"],
- "24":["HF"],
- "2":["HYPERTENSION"],
- "31":["IBD"],
- "14":["IBS"],
- "35":["LEARNING_DISABILITY"],
- "39":["MULTIPLE_SCLEROSIS"],
- "38":["PARKINSONS"],
- "25":["PROSTATE_DISORDERS"],
- "23":["PVD"],
- "19":["STROKE"],
- "40":["VIRAL_HEPATITIS"]
+ "columns": {
+ "read2_code": "Read Code"
+ },
+ "concept_set_categories": {
+ "13": [
+ "ANXIETY"
+ ],
+ "22": [
+ "ARRHYTHMIA"
+ ],
+ "5": [
+ "ASTHMA"
+ ],
+ "33": [
+ "BLINDNESS_AND_LOW_VISION"
+ ],
+ "37": [
+ "BRONCHIECSTASIS"
+ ],
+ "41": [
+ "CHRONIC_FATIGUE_SYNDROME"
+ ],
+ "34": [
+ "CHRONIC_SINUSITIS"
+ ],
+ "12": [
+ "COPD"
+ ],
+ "6": [
+ "CORONARY_HEART_DISEASE"
+ ],
+ "11": [
+ "DEAFNESS"
+ ],
+ "28": [
+ "DEMENTIA_ALZHEIMER"
+ ],
+ "3": [
+ "DEPRESSION"
+ ],
+ "21": [
+ "DIVERTICULAR_DISEASE"
+ ],
+ "16": [
+ "DRUG_ALCOHOL_MISUSE"
+ ],
+ "17": [
+ "DRUG_ALCOHOL_MISUSE"
+ ],
+ "36": [
+ "EATING_DISORDERS"
+ ],
+ "27": [
+ "EPILEPSY"
+ ],
+ "26": [
+ "GLAUCOMA"
+ ],
+ "24": [
+ "HF"
+ ],
+ "2": [
+ "HYPERTENSION"
+ ],
+ "31": [
+ "IBD"
+ ],
+ "14": [
+ "IBS"
+ ],
+ "35": [
+ "LEARNING_DISABILITY"
+ ],
+ "39": [
+ "MULTIPLE_SCLEROSIS"
+ ],
+ "38": [
+ "PARKINSONS"
+ ],
+ "25": [
+ "PROSTATE_DISORDERS"
+ ],
+ "23": [
+ "PVD"
+ ],
+ "19": [
+ "STROKE"
+ ],
+ "40": [
+ "VIRAL_HEPATITIS"
+ ]
}
}
]
},
{
- "folder":"codes/GitHub_TG_repository",
- "description":"Ho's Paper Code Lists",
- "files":[
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["AUTISM_AND_ADHD"]
- },
- {
- "file":"ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["AUTISM_AND_ADHD"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- {
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["AUTISM_AND_ADHD"]
- },
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ADDISONS_DISEASE"]
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- {
- "file":"Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_AURUM.csv",
- "columns":{
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- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ADDISONS_DISEASE"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ADDISONS_DISEASE"]
- },
- {
- "file":"Addison_Disease_birm_cam/Addison_Disease_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ADDISONS_DISEASE"]
- },
- {
- "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DRUG_ALCOHOL_MISUSE"]
- },
- {
- "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DRUG_ALCOHOL_MISUSE"]
- },
- {
- "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DRUG_ALCOHOL_MISUSE"]
- },
- {
- "file":"AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DRUG_ALCOHOL_MISUSE"]
- },
- {
- "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ "folder": "codes/GitHub_TG_repository",
+ "description": "Ho's Paper Code Lists",
+ "files": [
+ {
+ "file": "ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "AUTISM_AND_ADHD"
+ ]
},
- {
- "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "ADHD_mm_birm_cam/ADHD_mm_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "AUTISM_AND_ADHD"
+ ]
},
- {
- "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "ADHD_mm_birm_cam/ADHD_mm_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "AUTISM_AND_ADHD"
+ ]
},
- {
- "file":"Alzheimers_birm_cam/Alzheimers_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "ADHD_mm_birm_cam/ADHD_mm_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "AUTISM_AND_ADHD"
+ ]
},
- {
- "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANKYLOSING_SPONDYLITIS"]
+ {
+ "file": "Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ADDISONS_DISEASE"
+ ]
},
- {
- "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANKYLOSING_SPONDYLITIS"]
+ {
+ "file": "Addison_Disease_birm_cam/Addison_Disease_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ADDISONS_DISEASE"
+ ]
},
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANKYLOSING_SPONDYLITIS"]
+ {
+ "file": "Addison_Disease_birm_cam/Addison_Disease_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ADDISONS_DISEASE"
+ ]
},
- {
- "file":"AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANKYLOSING_SPONDYLITIS"]
+ {
+ "file": "Addison_Disease_birm_cam/Addison_Disease_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ADDISONS_DISEASE"
+ ]
},
- {
- "file":"Anxiety_birm_cam/Anxiety_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANXIETY"]
+ {
+ "file": "AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DRUG_ALCOHOL_MISUSE"
+ ]
},
- {
- "file":"Anxiety_birm_cam/Anxiety_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANXIETY"]
+ {
+ "file": "AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DRUG_ALCOHOL_MISUSE"
+ ]
},
- {
- "file":"Anxiety_birm_cam/Anxiety_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANXIETY"]
+ {
+ "file": "AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DRUG_ALCOHOL_MISUSE"
+ ]
},
- {
- "file":"Anxiety_birm_cam/Anxiety_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANXIETY"]
+ {
+ "file": "AlcoholMisuse_birm_cam/AlcoholMisuse_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DRUG_ALCOHOL_MISUSE"
+ ]
},
- {
- "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANEURYSM"]
+ {
+ "file": "Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
- {
- "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANEURYSM"]
+ {
+ "file": "Alzheimers_birm_cam/Alzheimers_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
- {
- "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANEURYSM"]
+ {
+ "file": "Alzheimers_birm_cam/Alzheimers_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
- {
- "file":"AorticAneurysm_Bham_CAM/AorticAneurysm_Bham_CAM_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANEURYSM"]
+ {
+ "file": "Alzheimers_birm_cam/Alzheimers_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
- {
- "file":"Arrhythmia_Bham_CAM/Arrhythmia_Bham_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ARRHYTHMIA"]
+ {
+ "file": "AnkylosingSpondylitis_MM_birm_cam/AnkylosingSpondylitis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ARRHYTHMIA"]
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+ "columns": {
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+ "metadata": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ARRHYTHMIA"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ },
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ARRHYTHMIA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ASTHMA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ASTHMA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ASTHMA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ASTHMA"]
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+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ATOPIC_ECZEMA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ATOPIC_ECZEMA"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ATOPIC_ECZEMA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ATOPIC_ECZEMA"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["AUTISM_AND_ADHD"]
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+ "columns": {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["AUTISM_AND_ADHD"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["AUTISM_AND_ADHD"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["AUTISM_AND_ADHD"]
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+ "columns": {
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+ "metadata": [
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- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "file": "Asthma_PUSHAsthma/Asthma_PUSHAsthma_IMRD.csv",
+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "file": "Asthma_PUSHAsthma/Asthma_PUSHAsthma_ICD10.csv",
+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ "concept_set": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ "concept_set": [
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ANAEMIA "]
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ },
+ "concept_set": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PROSTATE_DISORDERS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "concept_set": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["PROSTATE_DISORDERS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ "concept_set": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PROSTATE_DISORDERS"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "concept_set": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BIPOLAR_DISORDER"]
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+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["BIPOLAR_DISORDER"]
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+ "file": "Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["BIPOLAR_DISORDER"]
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+ "file": "Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BIPOLAR_DISORDER"]
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+ "file": "Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BREAST_CANCER"]
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+ "file": "Autoimmune_liver_disease_birm_cam/Autoimmune_liver_disease_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BREAST_CANCER"]
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+ "file": "B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ANAEMIA "
+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BREAST_CANCER"]
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+ "file": "B12deficiency_birm_cam/B12deficiency_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ "ANAEMIA "
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BREAST_CANCER"]
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+ "file": "B12deficiency_birm_cam/B12deficiency_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ANAEMIA "
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},
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- "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BRONCHIECSTASIS"]
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+ "file": "B12deficiency_birm_cam/B12deficiency_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "ANAEMIA "
+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BRONCHIECSTASIS"]
+ {
+ "file": "Benign Prostate Hyperplasia_birm_cam/Benign Prostate Hyperplasia_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "concept_set": [
+ "PROSTATE_DISORDERS"
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},
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- "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BRONCHIECSTASIS"]
+ {
+ "file": "Benign Prostate Hyperplasia_birm_cam/Benign Prostate Hyperplasia_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PROSTATE_DISORDERS"
+ ]
},
- {
- "file":"Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["BRONCHIECSTASIS"]
+ {
+ "file": "Benign Prostate Hyperplasia_birm_cam/Benign Prostate Hyperplasia_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PROSTATE_DISORDERS"
+ ]
},
- {
- "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CKD_STAGE3_5"]
+ {
+ "file": "Bipolar_birm_cam/Bipolar_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BIPOLAR_DISORDER"
+ ]
},
- {
- "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CKD_STAGE3_5"]
+ {
+ "file": "Bipolar_birm_cam/Bipolar_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BIPOLAR_DISORDER"
+ ]
},
- {
- "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CKD_STAGE3_5"]
+ {
+ "file": "Bipolar_birm_cam/Bipolar_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BIPOLAR_DISORDER"
+ ]
},
- {
- "file":"CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CKD_STAGE3_5"]
+ {
+ "file": "Bipolar_birm_cam/Bipolar_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BIPOLAR_DISORDER"
+ ]
},
- {
- "file":"COPD_birm_cam/COPD_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COPD "]
+ {
+ "file": "BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BREAST_CANCER"
+ ]
},
- {
- "file":"COPD_birm_cam/COPD_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COPD "]
+ {
+ "file": "BreastCancer_birm_cam/BreastCancer_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BREAST_CANCER"
+ ]
},
- {
- "file":"COPD_birm_cam/COPD_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COPD "]
+ {
+ "file": "BreastCancer_birm_cam/BreastCancer_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BREAST_CANCER"
+ ]
},
- {
- "file":"COPD_birm_cam/COPD_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COPD "]
+ {
+ "file": "BreastCancer_birm_cam/BreastCancer_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BREAST_CANCER"
+ ]
},
- {
- "file":"ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_FATIGUE_SYNDROME"]
+ {
+ "file": "Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BRONCHIECSTASIS"
+ ]
},
- {
- "file":"ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_FATIGUE_SYNDROME"]
+ {
+ "file": "Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BRONCHIECSTASIS"
+ ]
},
- {
- "file":"ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_FATIGUE_SYNDROME"]
+ {
+ "file": "Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BRONCHIECSTASIS"
+ ]
},
- {
- "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "Bronchiectasis_birm_cam/Bronchiectasis_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "BRONCHIECSTASIS"
+ ]
},
- {
- "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CKD_STAGE3_5"
+ ]
},
- {
- "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CKD_STAGE3_5"
+ ]
},
- {
- "file":"ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CKD_STAGE3_5"
+ ]
},
- {
- "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PANCREATIC_DISEASE"]
+ {
+ "file": "CKDstage3to5_Bham_CAM/CKDstage3to5_Bham_CAM_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CKD_STAGE3_5"
+ ]
},
- {
- "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PANCREATIC_DISEASE"]
+ {
+ "file": "COPD_birm_cam/COPD_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COPD "
+ ]
},
- {
- "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PANCREATIC_DISEASE"]
+ {
+ "file": "COPD_birm_cam/COPD_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COPD "
+ ]
},
- {
- "file":"ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PANCREATIC_DISEASE"]
+ {
+ "file": "COPD_birm_cam/COPD_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COPD "
+ ]
},
- {
- "file":"ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_SINUSITIS"]
+ {
+ "file": "COPD_birm_cam/COPD_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COPD "
+ ]
},
- {
- "file":"ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_SINUSITIS"]
+ {
+ "file": "ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_FATIGUE_SYNDROME"
+ ]
},
- {
- "file":"ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_SINUSITIS"]
+ {
+ "file": "ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_FATIGUE_SYNDROME"
+ ]
},
- {
- "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "ChronicFatigueSyndromeMM_birm_cam/ChronicFatigueSyndromeMM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_FATIGUE_SYNDROME"
+ ]
},
- {
- "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
+ {
+ "file": "ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_BACK_PAIN", "CHRONIC_PAIN"]
+ {
+ "file": "ChronicLiverDisease_MM_birm_cam/ChronicLiverDisease_MM_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_BACK_PAIN", "CHRONIC_PAIN"]
+ {
+ "file": "ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PANCREATIC_DISEASE"
+ ]
},
- {
- "file":"Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_BACK_PAIN", "CHRONIC_PAIN"]
+ {
+ "file": "ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PANCREATIC_DISEASE"
+ ]
},
- {
- "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COELIAC_DISEASE"]
+ {
+ "file": "ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PANCREATIC_DISEASE"
+ ]
},
- {
- "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COELIAC_DISEASE"]
+ {
+ "file": "ChronicPancreatitis_MM_birm_cam/ChronicPancreatitis_MM_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PANCREATIC_DISEASE"
+ ]
},
- {
- "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COELIAC_DISEASE"]
+ {
+ "file": "ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_SINUSITIS"
+ ]
},
- {
- "file":"Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COELIAC_DISEASE"]
+ {
+ "file": "ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_SINUSITIS"
+ ]
},
- {
- "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COLON_CANCER"]
+ {
+ "file": "ChronicSinusitis_birm_cam/ChronicSinusitis_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_SINUSITIS"
+ ]
},
- {
- "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COLON_CANCER"]
+ {
+ "file": "Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COLON_CANCER"]
+ {
+ "file": "Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"Colon_cancer__bham_cam/Colon_cancer__bham_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["COLON_CANCER"]
+ {
+ "file": "Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
- {
- "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_PAIN"]
+ {
+ "file": "Chronic_liver_disease_alcohol_birm_cam/Chronic_liver_disease_alcohol_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE"
+ ]
},
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- "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_PAIN"]
+ {
+ "file": "Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_BACK_PAIN",
+ "CHRONIC_PAIN"
+ ]
},
- {
- "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_PAIN"]
+ {
+ "file": "Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_BACK_PAIN",
+ "CHRONIC_PAIN"
+ ]
},
- {
- "file":"ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_PAIN"]
+ {
+ "file": "Chronicbackpain_MM_birm_cam/Chronicbackpain_MM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_BACK_PAIN",
+ "CHRONIC_PAIN"
+ ]
},
- {
- "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ {
+ "file": "Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COELIAC_DISEASE"
+ ]
},
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ {
+ "file": "Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COELIAC_DISEASE"
+ ]
},
- {
- "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ {
+ "file": "Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COELIAC_DISEASE"
+ ]
},
- {
- "file":"CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"]
+ {
+ "file": "Coeliac_disease_birm_cam/Coeliac_disease_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COELIAC_DISEASE"
+ ]
},
- {
- "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["IBD "]
+ {
+ "file": "Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COLON_CANCER"
+ ]
},
- {
- "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["IBD "]
+ {
+ "file": "Colon_cancer__bham_cam/Colon_cancer__bham_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COLON_CANCER"
+ ]
},
- {
- "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["IBD "]
+ {
+ "file": "Colon_cancer__bham_cam/Colon_cancer__bham_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COLON_CANCER"
+ ]
},
- {
- "file":"Crohns_disease_birm_cam/Crohns_disease_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["IBD "]
+ {
+ "file": "Colon_cancer__bham_cam/Colon_cancer__bham_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "COLON_CANCER"
+ ]
},
- {
- "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CYSTIC_FIBROSIS"]
+ {
+ "file": "ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_PAIN"
+ ]
},
- {
- "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CYSTIC_FIBROSIS"]
+ {
+ "file": "ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_PAIN"
+ ]
},
- {
- "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CYSTIC_FIBROSIS"]
+ {
+ "file": "ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_PAIN"
+ ]
},
- {
- "file":"CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CYSTIC_FIBROSIS"]
+ {
+ "file": "ComplexPainMM_birm_cam/ComplexPainMM_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_PAIN"
+ ]
},
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- "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"
+ ]
},
- {
- "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"
+ ]
},
- {
- "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"
+ ]
},
- {
- "file":"DementiaOther_birm_cam/DementiaOther_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEMENTIA_ALZHEIMER"]
+ {
+ "file": "CongenitalHrtDx_NoSurg_Bham_CAM/CongenitalHrtDx_NoSurg_Bham_CAM_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CONGENITAL_DIS_CHROMOSOMAL_ABNORMALITIES"
+ ]
},
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- "file":"Depression_birm_cam/Depression_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEPRESSION"]
+ {
+ "file": "Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "IBD "
+ ]
},
- {
- "file":"Depression_birm_cam/Depression_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEPRESSION"]
+ {
+ "file": "Crohns_disease_birm_cam/Crohns_disease_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "IBD "
+ ]
},
- {
- "file":"Depression_birm_cam/Depression_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEPRESSION"]
+ {
+ "file": "Crohns_disease_birm_cam/Crohns_disease_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "IBD "
+ ]
},
- {
- "file":"Depression_birm_cam/Depression_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DEPRESSION"]
+ {
+ "file": "Crohns_disease_birm_cam/Crohns_disease_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "IBD "
+ ]
},
- {
- "file":"Dialysis MM_birm_cam/Dialysis MM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DIALYSIS"]
+ {
+ "file": "CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CYSTIC_FIBROSIS"
+ ]
},
- {
- "file":"Dialysis MM_birm_cam/Dialysis MM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DIALYSIS"]
+ {
+ "file": "CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CYSTIC_FIBROSIS"
+ ]
},
- {
- "file":"Dialysis MM_birm_cam/Dialysis MM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["DIALYSIS"]
+ {
+ "file": "CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CYSTIC_FIBROSIS"
+ ]
},
- {
- "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EATING_DISORDERS"]
+ {
+ "file": "CysticFibrosis_birm_cam/CysticFibrosis_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CYSTIC_FIBROSIS"
+ ]
},
- {
- "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EATING_DISORDERS"]
+ {
+ "file": "DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
- {
- "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EATING_DISORDERS"]
+ {
+ "file": "DementiaOther_birm_cam/DementiaOther_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
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- "file":"EatingDisorders_birm_cam/EatingDisorders_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EATING_DISORDERS"]
+ {
+ "file": "DementiaOther_birm_cam/DementiaOther_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
- {
- "file":"EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EHLERS_DANLOS_SYNDROME"]
+ {
+ "file": "DementiaOther_birm_cam/DementiaOther_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEMENTIA_ALZHEIMER"
+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EHLERS_DANLOS_SYNDROME"]
+ {
+ "file": "Depression_birm_cam/Depression_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEPRESSION"
+ ]
},
- {
- "file":"EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EHLERS_DANLOS_SYNDROME"]
+ {
+ "file": "Depression_birm_cam/Depression_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEPRESSION"
+ ]
},
- {
- "file":"Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ENDOMETRIOSIS"]
+ {
+ "file": "Depression_birm_cam/Depression_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEPRESSION"
+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ENDOMETRIOSIS"]
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+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DEPRESSION"
+ ]
},
- {
- "file":"Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ENDOMETRIOSIS"]
+ {
+ "file": "Dialysis MM_birm_cam/Dialysis MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DIALYSIS"
+ ]
},
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- "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EPILEPSY"]
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+ "file": "Dialysis MM_birm_cam/Dialysis MM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DIALYSIS"
+ ]
},
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- "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EPILEPSY"]
+ {
+ "file": "Dialysis MM_birm_cam/Dialysis MM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "DIALYSIS"
+ ]
},
- {
- "file":"Epilepsy_birm_cam/Epilepsy_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EPILEPSY"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EATING_DISORDERS"
+ ]
},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["EPILEPSY"]
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+ "file": "EatingDisorders_birm_cam/EatingDisorders_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EATING_DISORDERS"
+ ]
},
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- "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["FIBROMYALGIA"]
+ {
+ "file": "EatingDisorders_birm_cam/EatingDisorders_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EATING_DISORDERS"
+ ]
},
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- "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["FIBROMYALGIA"]
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+ "file": "EatingDisorders_birm_cam/EatingDisorders_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EATING_DISORDERS"
+ ]
},
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- "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["FIBROMYALGIA"]
+ {
+ "file": "EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EHLERS_DANLOS_SYNDROME"
+ ]
},
- {
- "file":"Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["FIBROMYALGIA"]
+ {
+ "file": "EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EHLERS_DANLOS_SYNDROME"
+ ]
},
- {
- "file":"Folate deficiency_birm_cam/Folate deficiency_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
+ {
+ "file": "EhlersDanlosSyndrome3_birm_cam/EhlersDanlosSyndrome3_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
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+ ]
},
- {
- "file":"Folate deficiency_birm_cam/Folate deficiency_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
+ {
+ "file": "Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ENDOMETRIOSIS"
+ ]
},
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
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+ "file": "Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ENDOMETRIOSIS"
+ ]
},
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- "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GLAUCOMA"]
+ {
+ "file": "Endometriosis_Adenomyosis_birm_cam/Endometriosis_Adenomyosis_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ENDOMETRIOSIS"
+ ]
},
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- "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GLAUCOMA"]
+ {
+ "file": "Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EPILEPSY"
+ ]
},
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- "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GLAUCOMA"]
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+ "file": "Epilepsy_birm_cam/Epilepsy_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EPILEPSY"
+ ]
},
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- "file":"Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GLAUCOMA"]
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+ "file": "Epilepsy_birm_cam/Epilepsy_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EPILEPSY"
+ ]
},
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- "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GOUT"]
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+ "file": "Epilepsy_birm_cam/Epilepsy_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "EPILEPSY"
+ ]
},
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- "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GOUT"]
+ {
+ "file": "Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "FIBROMYALGIA"
+ ]
},
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- "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GOUT"]
+ {
+ "file": "Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "FIBROMYALGIA"
+ ]
},
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- "file":"Gout_MM_birm_cam/Gout_MM_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["GOUT"]
+ {
+ "file": "Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "FIBROMYALGIA"
+ ]
},
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- "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HF"]
+ {
+ "file": "Fibromyalgia_Bham_CAM/Fibromyalgia_Bham_CAM_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "FIBROMYALGIA"
+ ]
},
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- "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HF"]
+ {
+ "file": "Folate deficiency_birm_cam/Folate deficiency_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ANAEMIA "
+ ]
},
- {
- "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HF"]
+ {
+ "file": "Folate deficiency_birm_cam/Folate deficiency_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ANAEMIA "
+ ]
},
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- "file":"HF_Bham_CAM_Final/HF_Bham_CAM_Final_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HF"]
+ {
+ "file": "Folate deficiency_birm_cam/Folate deficiency_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "ANAEMIA "
+ ]
},
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- "file":"HIVaids_birm_cam/HIVaids_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HIVAIDS"]
+ {
+ "file": "Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GLAUCOMA"
+ ]
},
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- "file":"HIVaids_birm_cam/HIVaids_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HIVAIDS"]
+ {
+ "file": "Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GLAUCOMA"
+ ]
},
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- "file":"HIVaids_birm_cam/HIVaids_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HIVAIDS"]
+ {
+ "file": "Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GLAUCOMA"
+ ]
},
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- "file":"HIVaids_birm_cam/HIVaids_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HIVAIDS"]
+ {
+ "file": "Glaucoma_Prevalence_Birm_Cam/Glaucoma_Prevalence_Birm_Cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GLAUCOMA"
+ ]
},
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- "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARALYSIS"]
+ {
+ "file": "Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GOUT"
+ ]
},
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- "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARALYSIS"]
+ {
+ "file": "Gout_MM_birm_cam/Gout_MM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GOUT"
+ ]
},
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- "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARALYSIS"]
+ {
+ "file": "Gout_MM_birm_cam/Gout_MM_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GOUT"
+ ]
},
- {
- "file":"Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARALYSIS"]
+ {
+ "file": "Gout_MM_birm_cam/Gout_MM_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "GOUT"
+ ]
},
- {
- "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HF"
+ ]
},
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- "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HF_Bham_CAM_Final/HF_Bham_CAM_Final_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HF"
+ ]
},
- {
- "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HF_Bham_CAM_Final/HF_Bham_CAM_Final_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HF"
+ ]
},
- {
- "file":"Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HF_Bham_CAM_Final/HF_Bham_CAM_Final_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HF"
+ ]
},
- {
- "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HIVaids_birm_cam/HIVaids_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HIVAIDS"
+ ]
},
- {
- "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HIVaids_birm_cam/HIVaids_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HIVAIDS"
+ ]
},
- {
- "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HIVaids_birm_cam/HIVaids_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HIVAIDS"
+ ]
},
- {
- "file":"Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE", "VIRAL_HEPATITIS"]
+ {
+ "file": "HIVaids_birm_cam/HIVaids_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HIVAIDS"
+ ]
},
- {
- "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTENSION"]
+ {
+ "file": "Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PARALYSIS"
+ ]
},
- {
- "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTENSION"]
+ {
+ "file": "Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PARALYSIS"
+ ]
},
- {
- "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTENSION"]
+ {
+ "file": "Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PARALYSIS"
+ ]
},
- {
- "file":"Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTENSION"]
+ {
+ "file": "Hemi_Para_Quadriplegia_birm_cam/Hemi_Para_Quadriplegia_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "PARALYSIS"
+ ]
},
- {
- "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTHYROIDISM"]
+ {
+ "file": "Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTHYROIDISM"]
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+ "file": "Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTHYROIDISM"]
+ {
+ "file": "Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPERTHYROIDISM"]
+ {
+ "file": "Hepatitis_B_birm_cam/Hepatitis_B_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPOTHYROIDISM"]
+ {
+ "file": "Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPOTHYROIDISM"]
+ {
+ "file": "Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPOTHYROIDISM"]
+ {
+ "file": "Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["HYPOTHYROIDISM"]
+ {
+ "file": "Hepatitis_C_birm_cam/Hepatitis_C_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "CHRONIC_LIVER_DISEASE",
+ "VIRAL_HEPATITIS"
+ ]
},
- {
- "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CORONARY_HEART_DISEASE"]
+ {
+ "file": "Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTENSION"
+ ]
},
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- "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CORONARY_HEART_DISEASE"]
+ {
+ "file": "Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTENSION"
+ ]
},
- {
- "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CORONARY_HEART_DISEASE"]
+ {
+ "file": "Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTENSION"
+ ]
},
- {
- "file":"IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CORONARY_HEART_DISEASE"]
+ {
+ "file": "Hypertension_BhaM_CAM/Hypertension_BhaM_CAM_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTENSION"
+ ]
},
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- "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ILD"]
+ {
+ "file": "Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTHYROIDISM"
+ ]
},
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- "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ILD"]
+ {
+ "file": "Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTHYROIDISM"
+ ]
},
- {
- "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ILD"]
+ {
+ "file": "Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTHYROIDISM"
+ ]
},
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- "file":"ILD_sh_20092020_birm_cam/ILD_sh_20092020_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ILD"]
+ {
+ "file": "Hyperthyroidism V2_birm_cam/Hyperthyroidism V2_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPERTHYROIDISM"
+ ]
},
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- "file":"Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["LEARNING_DISABILITY"]
+ {
+ "file": "Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPOTHYROIDISM"
+ ]
},
- {
- "file":"Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["LEARNING_DISABILITY"]
+ {
+ "file": "Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPOTHYROIDISM"
+ ]
},
- {
- "file":"Learningdisability_birm_cam/Learningdisability_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["LEARNING_DISABILITY"]
+ {
+ "file": "Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPOTHYROIDISM"
+ ]
},
- {
- "file":"MS_120421_birm_cam/MS_120421_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MULTIPLE_SCLEROSIS"]
+ {
+ "file": "Hypothyroidism draft V1_birm_cam/Hypothyroidism draft V1_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "HYPOTHYROIDISM"
+ ]
},
- {
- "file":"MS_120421_birm_cam/MS_120421_birm_cam_CPRD_AURUM.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MULTIPLE_SCLEROSIS"]
+ {
+ "file": "IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MULTIPLE_SCLEROSIS"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MULTIPLE_SCLEROSIS"]
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+ "file": "IHD_noMI_Bham_CAM/IHD_noMI_Bham_CAM_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MARFAN_SYNDROME"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MARFAN_SYNDROME"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ ]
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["MARFAN_SYNDROME"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MENIERES_DISEASE"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MENIERES_DISEASE"]
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+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["MENIERES_DISEASE"]
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+ "file": "Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["METASTATIC_CANCER"]
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+ "file": "Learningdisability_birm_cam/Learningdisability_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["METASTATIC_CANCER"]
+ {
+ "file": "Learningdisability_birm_cam/Learningdisability_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["METASTATIC_CANCER"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ },
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["METASTATIC_CANCER"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ ]
+ },
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ },
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+ ]
},
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- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["CHRONIC_LIVER_DISEASE"]
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+ "file": "MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "concept_set": [
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["OSTEOARTHRITIS"]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["OSTEOARTHRITIS"]
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+ "file": "MarfanSyndrome_birm_cam/MarfanSyndrome_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ },
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["OSTEOARTHRITIS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ "concept_set": [
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+ ]
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- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["OSTEOARTHRITIS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["OSTEOPOROSIS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["OSTEOPOROSIS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ ]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["OSTEOPOROSIS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["OSTEOPOROSIS"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PTSD"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PTSD"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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+ ]
},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PTSD"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ },
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PTSD"]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PVD "]
+ {
+ "file": "Osteoarthritis_MM_birm_cam/Osteoarthritis_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ ]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PVD "]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PVD "]
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+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PVD "]
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+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARKINSONS"]
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+ "file": "Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARKINSONS"]
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+ "file": "Osteoporosis_birm_cam/Osteoporosis_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "concept_set": [
+ "OSTEOPOROSIS"
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARKINSONS"]
+ {
+ "file": "Osteoporosis_birm_cam/Osteoporosis_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
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+ "concept_set": [
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PARKINSONS"]
+ {
+ "file": "Osteoporosis_birm_cam/Osteoporosis_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
+ "OSTEOPOROSIS"
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},
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- "file":"PerniciousAnaemia_birm_cam/PerniciousAnaemia_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["ANAEMIA "]
+ {
+ "file": "PTSD_TLC_V2/PTSD_TLC_V2_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ANAEMIA "]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["ANAEMIA "]
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
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- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "concept_set":["ANAEMIA "]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "concept_set":["PCOS"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "concept_set":["PCOS"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "concept_set":["PMR "]
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+ "snomed_code": "SNOMED_CT_CODE",
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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+ "snomed_code": "SNOMED_CT_CODE",
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "concept_set":["PMR "]
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+ "snomed_code": "SNOMED_CT_CODE",
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
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- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["PRIMARY_LUNG_CANCER"]
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- "concept_set":["PRIMARY_LUNG_CANCER"]
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+ "metadata": [
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- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["PRIMARY_LUNG_CANCER"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
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- "concept_set":["PROSTATE_CANCER"]
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- "columns":{
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- "concept_set":["PROSTATE_CANCER"]
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- "columns":{
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- "concept_set":["PROSTATE_CANCER"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["PSORIASIS"]
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+ "columns": {
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- "concept_set":["PSORIASIS"]
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- "metadata":["DESCRIPTION"]
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- "concept_set":["PSORIASIS"]
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- "concept_set":["PSORIASIS_ARTHRITIS"]
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- "metadata":["DESCRIPTION"]
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- "concept_set":["PSORIASIS_ARTHRITIS"]
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- "metadata":["DESCRIPTION"]
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- "concept_set":["PSORIASIS_ARTHRITIS"]
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+ "file": "PsoriaticArthritis2021_MM_birm_cam/PsoriaticArthritis2021_MM_birm_cam_IMRD.csv",
+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
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- "concept_set":["PSORIASIS_ARTHRITIS"]
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["RENAL_TRANSPLANT"]
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+ "file": "Renal transplant_MM_birm_cam/Renal transplant_MM_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["RENAL_TRANSPLANT"]
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+ "file": "Renal transplant_MM_birm_cam/Renal transplant_MM_birm_cam_CPRD_AURUM.csv",
+ "columns": {
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- "metadata":["DESCRIPTION"]
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+ "file": "diabetic_retinopathy_090121_birm_cam/diabetic_retinopathy_090121_birm_cam_ICD10.csv",
+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["DIVERTICULAR_DISEASE"]
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+ "metadata": [
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["DIVERTICULAR_DISEASE"]
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+ "metadata": [
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+ },
+ "concept_set": [
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},
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- "file":"diverticular_disease_birm_cam/diverticular_disease_birm_cam_ICD10.csv",
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- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["DIVERTICULAR_DISEASE"]
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+ "file": "diverticular_disease_birm_cam/diverticular_disease_birm_cam_ICD10.csv",
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+ "metadata": [
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+ },
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["LEUKAEMIA"]
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+ "file": "leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_GOLD.csv",
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},
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["LEUKAEMIA"]
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+ "file": "leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_CPRD_AURUM.csv",
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ "concept_set": [
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},
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["LEUKAEMIA"]
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+ "file": "leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_IMRD.csv",
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ },
+ "concept_set": [
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},
- {
- "file":"leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv",
- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["LEUKAEMIA"]
+ {
+ "file": "leukaemia_prevalence_birm_cam/leukaemia_prevalence_birm_cam_ICD10.csv",
+ "columns": {
+ "icd10_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ },
+ "concept_set": [
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},
- {
- "file":"lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["LYMPHOMA"]
+ {
+ "file": "lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ },
+ "concept_set": [
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},
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["LYMPHOMA"]
+ {
+ "file": "lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
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+ "concept_set": [
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},
- {
- "file":"lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["LYMPHOMA"]
+ {
+ "file": "lymphoma_prevalence_birm_cam/lymphoma_prevalence_birm_cam_IMRD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
+ "DESCRIPTION"
+ ]
+ },
+ "concept_set": [
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},
- {
- "file":"plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_GOLD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PLASMACELL"]
+ {
+ "file": "plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_GOLD.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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+ },
+ "concept_set": [
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},
- {
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- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PLASMACELL"]
+ {
+ "file": "plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_CPRD_AURUM.csv",
+ "columns": {
+ "read2_code": "READ_CODE",
+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
- {
- "file":"plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_IMRD.csv",
- "columns":{
- "read2_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
- },
- "concept_set":["PLASMACELL"]
+ {
+ "file": "plasmacell_neoplasm_birm_cam/plasmacell_neoplasm_birm_cam_IMRD.csv",
+ "columns": {
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+ "snomed_code": "SNOMED_CT_CODE",
+ "metadata": [
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},
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- "columns":{
- "icd10_code":"READ_CODE", "snomed_code":"SNOMED_CT_CODE",
- "metadata":["DESCRIPTION"]
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- "concept_set":["PLASMACELL"]
+ {
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}
]
},
{
- "folder":"codes/NEW BURDEN CODELISTS",
- "description":"New Buden Codes - downloaded 20/03/24",
+ "folder": "codes/NEW BURDEN CODELISTS",
+ "description": "New Buden Codes - downloaded 20/03/24",
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- "metadata":["description"]
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- "concept_set": ["EMBARRASSMENT"]
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- "excel_sheet":"Sheet1",
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- "metadata":["description"]
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- "excel_sheet":"Sheet1",
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- "metadata":["description"]
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- "concept_set": ["SUICIDAL"]
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- "metadata":["description"]
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- "excel_sheet":"Sheet1",
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- "concept_set": ["PHYSICAL_EXAMINATION"]
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+ "concept_set": [
+ "PHYSICAL_EXAMINATION"
+ ]
},
{
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- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["RESPIRATORY_TESTS"]
+ "file": "Investigation and monitoring/RESPIRATORY_TESTS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "RESPIRATORY_TESTS"
+ ]
},
{
- "file":"Learning and adapting/ALCOHOL_ADVICE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["ALCOHOL_ADVICE"]
+ "file": "Learning and adapting/ALCOHOL_ADVICE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "ALCOHOL_ADVICE"
+ ]
},
{
- "file":"Learning and adapting/BEREAVEMENT.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["BEREAVEMENT"]
+ "file": "Learning and adapting/BEREAVEMENT.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "BEREAVEMENT"
+ ]
},
{
- "file":"Learning and adapting/DIET_ADVICE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["DIET_ADVICE"]
+ "file": "Learning and adapting/DIET_ADVICE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "DIET_ADVICE"
+ ]
},
{
- "file":"Learning and adapting/EMPLOYMENT_PROBLEM.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["EMPLOYMENT_PROBLEM"]
+ "file": "Learning and adapting/EMPLOYMENT_PROBLEM.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "EMPLOYMENT_PROBLEM"
+ ]
},
{
- "file":"Learning and adapting/HOUSING_PROBLEM.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["HOUSING_PROBLEM"]
+ "file": "Learning and adapting/HOUSING_PROBLEM.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "HOUSING_PROBLEM"
+ ]
},
{
- "file":"Learning and adapting/LIFESTYLE_ADVICE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["LIFESTYLE_ADVICE"]
+ "file": "Learning and adapting/LIFESTYLE_ADVICE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "LIFESTYLE_ADVICE"
+ ]
},
{
- "file":"Learning and adapting/NEEDS_HELP.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["NEEDS_HELP"]
+ "file": "Learning and adapting/NEEDS_HELP.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "NEEDS_HELP"
+ ]
},
{
- "file":"Learning and adapting/NOT_COPING.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["NOT_COPING"]
+ "file": "Learning and adapting/NOT_COPING.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "NOT_COPING"
+ ]
},
{
- "file":"Learning and adapting/PHYS_ACT__ADVICE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["PHYSICAL_ACTIVITY_ADVICE"]
+ "file": "Learning and adapting/PHYS_ACT__ADVICE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "PHYSICAL_ACTIVITY_ADVICE"
+ ]
},
{
- "file":"Learning and adapting/SMOKING_STATUS_ASSESSED.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["SMOKING_STATUS_ASSESSED"]
+ "file": "Learning and adapting/SMOKING_STATUS_ASSESSED.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "SMOKING_STATUS_ASSESSED"
+ ]
},
{
- "file":"Learning and adapting/WEIGHT_LOSS_ADVICE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["WEIGHT_LOSS_ADVICE"]
+ "file": "Learning and adapting/WEIGHT_LOSS_ADVICE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "WEIGHT_LOSS_ADVICE"
+ ]
},
{
- "file":"Medication work/ADHERENCE_PROBLEMS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["ADHERENCE_PROBLEMS"]
+ "file": "Medication work/ADHERENCE_PROBLEMS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "ADHERENCE_PROBLEMS"
+ ]
},
{
- "file":"Medication work/DIFFICULTY_MANAGING_MEDICATION.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["DIFFICULTY_WITH_MEDICATION"]
+ "file": "Medication work/DIFFICULTY_MANAGING_MEDICATION.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "DIFFICULTY_WITH_MEDICATION"
+ ]
},
{
- "file":"Medication work/DRUG_ADVERSE_EFFECT.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["DRUG_ADVERSE_EFFECT"]
+ "file": "Medication work/DRUG_ADVERSE_EFFECT.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "DRUG_ADVERSE_EFFECT"
+ ]
},
{
- "file":"Symptoms/BREATHLESSNESS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["BREATHLESSNESS"]
+ "file": "Symptoms/BREATHLESSNESS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "BREATHLESSNESS"
+ ]
},
{
- "file":"Symptoms/CHEST_PAIN.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["CHEST_PAIN"]
+ "file": "Symptoms/CHEST_PAIN.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "CHEST_PAIN"
+ ]
},
{
- "file":"Symptoms/CONFUSED.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["CONFUSED"]
+ "file": "Symptoms/CONFUSED.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "CONFUSED"
+ ]
},
{
- "file":"Symptoms/COUGH.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["COUGH"]
+ "file": "Symptoms/COUGH.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "COUGH"
+ ]
},
{
- "file":"Symptoms/GAIT_PROBLEMS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["GAIT_PROBLEMS"]
+ "file": "Symptoms/GAIT_PROBLEMS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "GAIT_PROBLEMS"
+ ]
},
{
- "file":"Symptoms/GI_PAIN.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["GI_PAIN"]
+ "file": "Symptoms/GI_PAIN.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "GI_PAIN"
+ ]
},
{
- "file":"Symptoms/MEMORY_PROBLEMS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["MEMORY_PROBLEMS"]
+ "file": "Symptoms/MEMORY_PROBLEMS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "MEMORY_PROBLEMS"
+ ]
},
{
- "file":"Symptoms/MOBILITY_PROBLEMS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["MOBILITY_PROBLEMS"]
+ "file": "Symptoms/MOBILITY_PROBLEMS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "MOBILITY_PROBLEMS"
+ ]
},
{
- "file":"Symptoms/NAUSEA.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["NAUSEA"]
+ "file": "Symptoms/NAUSEA.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "NAUSEA"
+ ]
},
{
- "file":"Symptoms/REDUCED_APPETITE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["REDUCED_APPETITE"]
+ "file": "Symptoms/REDUCED_APPETITE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "REDUCED_APPETITE"
+ ]
},
{
- "file":"Symptoms/REDUCED_PHYSICAL_STRENGTH.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["REDUCED_PHYSICAL_STRENGTH"]
+ "file": "Symptoms/REDUCED_PHYSICAL_STRENGTH.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "REDUCED_PHYSICAL_STRENGTH"
+ ]
},
{
- "file":"Symptoms/SLEEP_PROBLEMS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["SLEEP_PROBLEMS"]
+ "file": "Symptoms/SLEEP_PROBLEMS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "SLEEP_PROBLEMS"
+ ]
},
{
- "file":"Symptoms/SWEATING.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["SWEATING"]
+ "file": "Symptoms/SWEATING.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "SWEATING"
+ ]
},
{
- "file":"Symptoms/TIREDNESS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["TIREDNESS"]
+ "file": "Symptoms/TIREDNESS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "TIREDNESS"
+ ]
},
{
- "file":"Symptoms/UNINTENTIONAL_WEIGHT_LOSS.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["UNINTENTIONAL_WEIGHT_LOSS"]
+ "file": "Symptoms/UNINTENTIONAL_WEIGHT_LOSS.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "UNINTENTIONAL_WEIGHT_LOSS"
+ ]
},
{
- "file":"Symptoms/URINARY_INCONTINENCE.xlsx",
- "excel_sheet":"Sheet1",
- "columns":{
- "snomed_code":"Codes",
- "metadata":["description"]
- },
- "concept_set": ["URINARY_INCONTINENCE"]
+ "file": "Symptoms/URINARY_INCONTINENCE.xlsx",
+ "excel_sheet": "Sheet1",
+ "columns": {
+ "snomed_code": "Codes",
+ "metadata": [
+ "description"
+ ]
+ },
+ "concept_set": [
+ "URINARY_INCONTINENCE"
+ ]
}
]
}
]
-
-}
-
-
+}
\ No newline at end of file