From 60973bcea52eae2f1d3afab76c508abfbb867242 Mon Sep 17 00:00:00 2001
From: Michael Boniface <m.j.boniface@soton.ac.uk>
Date: Sun, 23 Feb 2025 21:24:49 +0000
Subject: [PATCH] added gitignore to phen init. closes #4
---
acmc/parse.py | 7 ++++---
acmc/phen.py | 20 +++++++++++++-------
2 files changed, 17 insertions(+), 10 deletions(-)
diff --git a/acmc/parse.py b/acmc/parse.py
index a2996ed..ca5b3e1 100644
--- a/acmc/parse.py
+++ b/acmc/parse.py
@@ -39,14 +39,15 @@ class Proto:
tuple[
str, # The description, e.g., "Not Empty"
Callable[
- [list], pd.Series,
+ [list],
+ pd.Series,
], # The first lambda function: takes a list and returns a pd.Series of booleans
Callable[
- [list, str], None,
+ [list, str],
+ None,
], # The second lambda function: takes a list and a string, and returns nothing
]
]
-
def __init__(self, name, trud_codes_path=None):
if trud_codes_path is not None:
diff --git a/acmc/phen.py b/acmc/phen.py
index fa94e75..dd2b6ff 100644
--- a/acmc/phen.py
+++ b/acmc/phen.py
@@ -136,7 +136,6 @@ def init(phen_dir, remote_url):
repo.clone(git_url, phen_path)
# open repo
repo = git.Repo(phen_path)
-
# check if there are any commits (new repo has no commits)
if (
len(repo.branches) == 0 or repo.head.is_detached
@@ -202,16 +201,23 @@ def init(phen_dir, remote_url):
},
"codes": [],
}
+
config_path = phen_path / CONFIG_FILE
with open(config_path, "w", encoding="utf-8") as f:
json.dump(config, f, indent=4)
- # TODO: add gitignore
-
- # Ignore all SQLite database files
- # *.db
- # *.sqlite
- # *.sqlite3
+ # add git ignore
+ ignore_content = """# Ignore SQLite database files
+ *.db
+ *.sqlite3
+
+ # Ignore SQLite journal and metadata files
+ *.db-journal
+ *.sqlite3-journal
+ """
+ ignore_path = phen_path / ".gitignore"
+ with open(ignore_path, "w") as file:
+ file.write(ignore_content)
# add to git repo and commit
for d in DEFAULT_PHEN_DIR_LIST:
--
GitLab