From 4f35f9baf3b0d0356f8671cdc01483bbdf05f4df Mon Sep 17 00:00:00 2001
From: Michael Boniface <m.j.boniface@soton.ac.uk>
Date: Mon, 24 Feb 2025 10:13:18 +0000
Subject: [PATCH] refactor: converted config.json to config.yaml and passes all
tests. #19.
---
examples/config.yaml | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
create mode 100644 examples/config.yaml
diff --git a/examples/config.yaml b/examples/config.yaml
new file mode 100644
index 0000000..964f15c
--- /dev/null
+++ b/examples/config.yaml
@@ -0,0 +1,23 @@
+concept_sets:
+ version: "v1.0.1"
+ omop:
+ vocabulary_id: "ACMC_Example"
+ vocabulary_name: "ACMC example phenotype"
+ vocabulary_reference: "https://git.soton.ac.uk/meldb/concepts-processing/-/tree/main/examples"
+ concept_set:
+ - concept_set_name: "ABDO_PAIN"
+ concept_set_status: "AGREED"
+ metadata: {}
+
+codes:
+ - folder: "clinical-codes-org"
+ description: "Downloaded 16/11/23"
+ files:
+ - file: "Symptom code lists/Abdominal pain/res176-abdominal-pain.csv"
+ columns:
+ read2: "code"
+ metadata:
+ - "description"
+ concept_set:
+ - "ABDO_PAIN"
+
--
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