From 1bdd3a79c5eb2193922af5232bd8e1e0dbd736dd Mon Sep 17 00:00:00 2001
From: Michael Boniface <m.j.boniface@soton.ac.uk>
Date: Wed, 12 Mar 2025 07:59:54 +0000
Subject: [PATCH] (docs) fixed config.yaml references in readme and docs
---
README.md | 2 +-
docs/index.md | 6 +++---
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/README.md b/README.md
index 432e728..a54fae7 100644
--- a/README.md
+++ b/README.md
@@ -189,7 +189,7 @@ cp -r ./examples/concepts/* ./workspace/phen/concepts
From the command prompt, copy example phenotype configuration files `/examples/config.json` to the phenotype directory:
```bash
-cp -r ./examples/config1.yaml ./workspace/phen/config.yaml
+cp -r ./examples/config1.yml ./workspace/phen/config.yml
```
- You can view the configuarion file here [`config.json`](./examples/config.json)
diff --git a/docs/index.md b/docs/index.md
index 430dfb5..c4ec6e0 100644
--- a/docs/index.md
+++ b/docs/index.md
@@ -71,13 +71,13 @@ workspace/ # Default workspace directory
│ │ ├── omop/ # Processed phenotype concept sets in OMOP CDM database exported as CSV files
│ ├── map/ # Process mapping from source to target code types
│ │ ├── errors/ # Errors recorded during mapping process
-│ ├── config.yaml # Phenotype configuration file
-│ ├── vocab_versions.yaml # Versions file for vocabularies used to generate concept sets
+│ ├── config.yml # Phenotype configuration file
+│ ├── vocab_versions.yml # Versions file for vocabularies used to generate concept sets
```
### **Configuration File**
-Each phenotype is defined by configuration is stored in the root of the phenotype directory in `config.yaml`. The file is yaml format.
+Each phenotype is defined by configuration is stored in the root of the phenotype directory in `config.yml`. The file is yaml format.
#### **Root Phenotype Element**
- `phenotype`: **(object)** The root element containing all phenotype-related concept sets and metadata.
--
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