diff --git a/docs/index.md b/docs/index.md index d0d4f7e769e9db7ed67f96b08eff575785c5dd6f..071f82181c36704c39bb9581ea58707b9e1d88bf 100644 --- a/docs/index.md +++ b/docs/index.md @@ -41,18 +41,18 @@ The tool supports verification and mapping across diagnostic coding formats belo ## Phenotype Definition -### **Phenotype directory structure +### **Phenotype directory structure** ``` workspace/ # Default workspace directory ├── phen/ # Default phenotype directory │ ├── codes/ # Phenotype source concept code lists directory │ ├── concept-set/ # Processed phenotype concept sets in CSV format -│ ├── map/ # Process mapping from source to target code types -│ │ ├── errors/ # Errors recorded during mapping -│ ├── omop/ # Processed phenotype concept sets in OMOP database CSV files -│ ├── config.yaml # Phenotype configuration file -│ ├── vocab_versions.yaml # Versions file for vocabularies used to generate concept sets +│ ├── map/ # Process mapping from source to target code types +│ │ ├── errors/ # Errors recorded during mapping process +│ ├── omop/ # Processed phenotype concept sets in OMOP database CSV files +│ ├── config.yaml # Phenotype configuration file +│ ├── vocab_versions.yaml # Versions file for vocabularies used to generate concept sets ``` ### **Configuration File**