diff --git a/bibliography.bib b/bibliography.bib new file mode 100644 index 0000000000000000000000000000000000000000..c8df73f2f13578de9b71ab2cb1f73795377b6940 --- /dev/null +++ b/bibliography.bib @@ -0,0 +1,420 @@ + ############## + # R packages + + @Manual{baseR, + title = {R: A Language and Environment for Statistical Computing}, + author = {{R Core Team}}, + organization = {R Foundation for Statistical Computing}, + address = {Vienna, Austria}, + year = {2016}, + url = {https://www.R-project.org/}, + } + @Manual{bookdown, + title = {bookdown: Authoring Books and Technical Documents with R Markdown}, + author = {Yihui Xie}, + year = {2018}, + note = {R package version 0.9}, + url = {https://github.com/rstudio/bookdown}, + } + + @Manual{broom, + title = {broom: Convert Statistical Analysis Objects into Tidy Data Frames}, + author = {David Robinson}, + year = {2016}, + note = {R package version 0.4.1}, + url = {https://CRAN.R-project.org/package=broom}, + } + @Book{car, + title = {An {R} Companion to Applied Regression}, + edition = {Second}, + author = {John Fox and Sanford Weisberg}, + year = {2011}, + publisher = {Sage}, + address = {Thousand Oaks {CA}}, + url = {http://socserv.socsci.mcmaster.ca/jfox/Books/Companion}, + } + + @Manual{data.table, + title = {data.table: Extension of Data.frame}, + author = {M Dowle and A Srinivasan and T Short and S Lianoglou with contributions from R Saporta and E Antonyan}, + year = {2015}, + note = {R package version 1.9.6}, + url = {https://CRAN.R-project.org/package=data.table}, + } + + @Manual{doBy, + title = {doBy: Groupwise Statistics, LSmeans, Linear Contrasts, Utilities}, + author = {Søren Højsgaard and Ulrich Halekoh}, + year = {2016}, + note = {R package version 4.5-15}, + url = {https://CRAN.R-project.org/package=doBy}, + } + + @Manual{dplyr, + title = {dplyr: A Grammar of Data Manipulation}, + author = {Hadley Wickham and Romain Francois}, + year = {2016}, + note = {R package version 0.5.0}, + url = {https://CRAN.R-project.org/package=dplyr}, + } + @Article{drake, + title = {The drake R package: a pipeline toolkit for reproducibility and high-performance computing}, + author = {William Michael Landau}, + journal = {Journal of Open Source Software}, + year = {2018}, + volume = {3}, + number = {21}, + url = {https://doi.org/10.21105/joss.00550}, + } + @Manual{dtplyr, + title = {dtplyr: Data Table Back-End for 'dplyr'}, + author = {Hadley Wickham}, + year = {2016}, + note = {R package version 0.0.1}, + url = {https://CRAN.R-project.org/package=dtplyr}, + } + + @Manual{fgarch, + title = {fGarch: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling}, + author = {Diethelm Wuertz and Yohan Chalabi with contribution from Michal Miklovic and Chris Boudt and Pierre Chausse and {others}}, + year = {2016}, + note = {R package version 3010.82.1}, + url = {https://CRAN.R-project.org/package=fGarch}, + } + + @Manual{foreign, + title = {foreign: Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...}, + author = {{R Core Team}}, + year = {2015}, + note = {R package version 0.8-66}, + url = {https://CRAN.R-project.org/package=foreign}, + } + + @Book{fox_car, + title = {An {R} Companion to Applied Regression}, + edition = {Second}, + author = {John Fox and Sanford Weisberg}, + year = {2011}, + publisher = {Sage}, + address = {Thousand Oaks {CA}}, + url = {http://socserv.socsci.mcmaster.ca/jfox/Books/Companion}, + } + + @Manual{gdata, + title = {gdata: Various R Programming Tools for Data Manipulation}, + author = {Gregory R. Warnes and Ben Bolker and Gregor Gorjanc and Gabor Grothendieck and Ales Korosec and Thomas Lumley and Don MacQueen and Arni Magnusson and Jim Rogers and {others}}, + year = {2015}, + note = {R package version 2.17.0}, + url = {https://CRAN.R-project.org/package=gdata}, + } + @Manual{ggjoy, + title = {ggjoy: Joyplots in ggplot2}, + author = {Claus O. Wilke}, + year = {2017}, + note = {R package version 0.1}, + url = {https://github.com/clauswilke/ggjoy}, + } + @Book{ggplot2, + author = {Hadley Wickham}, + title = {ggplot2: Elegant Graphics for Data Analysis}, + publisher = {Springer-Verlag New York}, + year = {2009}, + isbn = {978-0-387-98140-6}, + url = {http://ggplot2.org}, + } + @Article{ggmap, + author = {David Kahle and Hadley Wickham}, + title = {ggmap: Spatial Visualization with ggplot2}, + journal = {The R Journal}, + year = {2013}, + volume = {5}, + number = {1}, + pages = {144--161}, + url = {http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf}, + } + @Manual{gridExtra, + title = {gridExtra: Miscellaneous Functions for "Grid" Graphics}, + author = {Baptiste Auguie}, + year = {2016}, + note = {R package version 2.2.1}, + url = {https://CRAN.R-project.org/package=gridExtra}, + } + @Manual{here, + title = {here: A Simpler Way to Find Your Files}, + author = {Kirill Müller}, + year = {2017}, + note = {R package version 0.1}, + url = {https://CRAN.R-project.org/package=here}, + } + @Manual{Hmisc, + title = {Hmisc: Harrell Miscellaneous}, + author = {Frank E {Harrell Jr} and with contributions from Charles Dupont and many others.}, + year = {2016}, + note = {R package version 3.17-4}, + url = {https://CRAN.R-project.org/package=Hmisc}, + } +@Manual{kableExtra, + title = {kableExtra: Construct Complex Table with 'kable' and Pipe Syntax}, + author = {Hao Zhu}, + year = {2019}, + note = {R package version 1.0.1}, + url = {https://CRAN.R-project.org/package=kableExtra}, + } + @Manual{knitr, + title = {knitr: A General-Purpose Package for Dynamic Report Generation in R}, + author = {Yihui Xie}, + year = {2016}, + url = {https://CRAN.R-project.org/package=knitr}, + } + @Article{lmtest, + title = {Diagnostic Checking in Regression Relationships}, + author = {Achim Zeileis and Torsten Hothorn}, + journal = {R News}, + year = {2002}, + volume = {2}, + number = {3}, + pages = {7--10}, + url = {https://CRAN.R-project.org/doc/Rnews/}, + } + @Article{lubridate, + title = {Dates and Times Made Easy with {lubridate}}, + author = {Garrett Grolemund and Hadley Wickham}, + journal = {Journal of Statistical Software}, + year = {2011}, + volume = {40}, + number = {3}, + pages = {1--25}, + url = {http://www.jstatsoft.org/v40/i03/}, + } + @Manual{mapproj, + title = {mapproj: Map Projections}, + author = {Doug McIlroy. Packaged for R by Ray Brownrigg and Thomas P Minka and transition to Plan 9 codebase by Roger Bivand.}, + year = {2015}, + note = {R package version 1.2-4}, + url = {https://CRAN.R-project.org/package=mapproj}, + } + + @Manual{maptools, + title = {maptools: Tools for Reading and Handling Spatial Objects}, + author = {Roger Bivand and Nicholas Lewin-Koh}, + year = {2016}, + note = {R package version 0.8-39}, + url = {https://CRAN.R-project.org/package=maptools}, + } + + @Article{mefa, + title = {Processing Ecological Data in {R} with the {mefa} Package}, + author = {P\'eter S\'olymos}, + journal = {Journal of Statistical Software}, + year = {2009}, + volume = {29}, + number = {8}, + pages = {1--28}, + url = {http://www.jstatsoft.org/v29/i08/}, + } + @Article{openair, + title = {openair --- An R package for air quality data analysis}, + author = {David C. Carslaw and Karl Ropkins}, + journal = {Environmental Modelling & Software}, + volume = {27--28}, + number = {0}, + pages = {52--61}, + year = {2012}, + issn = {1364-8152}, + doi = {10.1016/j.envsoft.2011.09.008}, + } + @Article{plm, + title = {Panel Data Econometrics in {R}: The {plm} Package}, + author = {Yves Croissant and Giovanni Millo}, + journal = {Journal of Statistical Software}, + year = {2008}, + volume = {27}, + number = {2}, + url = {http://www.jstatsoft.org/v27/i02/}, + } + @Manual{plotly, + title = {plotly: Create Interactive Web Graphics via 'plotly.js'}, + author = {Carson Sievert and Chris Parmer and Toby Hocking and Scott Chamberlain and Karthik Ram and Marianne Corvellec and Pedro Despouy}, + year = {2016}, + note = {R package version 4.5.6}, + url = {https://CRAN.R-project.org/package=plotly}, + } + @Article{plyr, + title = {The Split-Apply-Combine Strategy for Data Analysis}, + author = {Hadley Wickham}, + journal = {Journal of Statistical Software}, + year = {2011}, + volume = {40}, + number = {1}, + pages = {1--29}, + url = {http://www.jstatsoft.org/v40/i01/}, + } + @Manual{readr, + title = {readr: Read Tabular Data}, + author = {Hadley Wickham and Jim Hester and Romain Francois}, + year = {2016}, + note = {R package version 1.0.0}, + url = {https://CRAN.R-project.org/package=readr}, + } + @Manual{readxl, + title = {readxl: Read Excel Files}, + author = {Hadley Wickham and Jennifer Bryan}, + year = {2017}, + note = {R package version 1.0.0}, + url = {https://CRAN.R-project.org/package=readxl}, + } + @Article{reshape2, + title = {Reshaping Data with the {reshape} Package}, + author = {Hadley Wickham}, + journal = {Journal of Statistical Software}, + year = {2007}, + volume = {21}, + number = {12}, + pages = {1--20}, + url = {http://www.jstatsoft.org/v21/i12/}, + } + @Manual{rio, + title = {rio: A Swiss-army knife for data file I/O}, + author = {Chung-hong Chan and Geoffrey CH Chan and Thomas J. Leeper and Jason Becker}, + year = {2016}, + note = {R package version 0.4.16}, + } + @Manual{rmarkdown, + title = {rmarkdown: Dynamic Documents for R}, + author = {JJ Allaire and Yihui Xie and Jonathan McPherson and Javier Luraschi and Kevin Ushey and Aron Atkins and Hadley Wickham and Joe Cheng and Winston Chang and Richard Iannone}, + year = {2020}, + note = {R package version 2.1}, + url = {https://github.com/rstudio/rmarkdown}, + } + @Book{rmarkdownBook, + title = {R Markdown: The Definitive Guide}, + author = {Yihui Xie and J.J. Allaire and Garrett Grolemund}, + publisher = {Chapman and Hall/CRC}, + address = {Boca Raton, Florida}, + year = {2018}, + note = {ISBN 9781138359338}, + url = {https://bookdown.org/yihui/rmarkdown}, + } + @Manual{rtweet, + title = {rtweet: Collecting Twitter Data}, + author = {Michael W. Kearney}, + year = {2018}, + note = {R package version 0.6.7}, + url = {https://cran.r-project.org/package=rtweet}, + } + + @Article{sandwich, + title = {Object-Oriented Computation of Sandwich Estimators}, + author = {Achim Zeileis}, + journal = {Journal of Statistical Software}, + year = {2006}, + volume = {16}, + number = {9}, + pages = {1--16}, + url = {http://www.jstatsoft.org/v16/i09/.}, + } + + @Manual{rgdal, + title = {rgdal: Bindings for the Geospatial Data Abstraction Library}, + author = {Roger Bivand and Tim Keitt and Barry Rowlingson}, + year = {2016}, + note = {R package version 1.1-10}, + url = {https://CRAN.R-project.org/package=rgdal}, + } + + @Manual{rgeos, + title = {rgeos: Interface to Geometry Engine - Open Source (GEOS)}, + author = {Roger Bivand and Colin Rundel}, + year = {2016}, + note = {R package version 0.3-19}, + url = {https://CRAN.R-project.org/package=rgeos}, + } + @Manual{skimr, + title = {skimr: skimr}, + author = {Eduardo {Arino de la Rubia} and Hao Zhu and Shannon Ellis and Elin Waring and Michael Quinn}, + year = {2017}, + note = {R package version 1.0}, + url = {https://github.com/ropenscilabs/skimr}, + } + @Manual{stringr, + title = {stringr: Simple, Consistent Wrappers for Common String Operations}, + author = {Hadley Wickham}, + year = {2016}, + note = {R package version 1.1.0}, + url = {https://CRAN.R-project.org/package=stringr}, + } + @Manual{@sparklyr, + title = {sparklyr: R Interface to Apache Spark}, + author = {Javier Luraschi and Kevin Ushey and JJ Allaire and {The Apache Software Foundation}}, + year = {2016}, + note = {R package version 0.4}, + url = {https://CRAN.R-project.org/package=sparklyr}, + } + + @Manual{stargazer, + title = {stargazer: Well-Formatted Regression and Summary Statistics Tables}, + author = {Marek Hlavac}, + year = {2015}, + note = {R package version 5.2}, + organization = {Harvard University}, + address = {Cambridge, USA}, + url = {http://CRAN.R-project.org/package=stargazer}, + } + +@article{survey, + title = {Analysis of complex survey samples}, + volume = {9}, + number = {1}, + urldate = {}}, + journal = {Journal of Statistical Software}, + author = {Lumley, T}, + pages = {1-19} +} + + @Manual{tables, + title = {tables: Formula-Driven Table Generation}, + author = {Duncan Murdoch}, + year = {2017}, + note = {R package version 0.8}, + url = {https://CRAN.R-project.org/package=tables}, + } + + @Manual{tidyverse, + title = {tidyverse: Easily Install and Load 'Tidyverse' Packages}, + author = {Hadley Wickham}, + year = {2017}, + note = {R package version 1.1.1}, + url = {https://CRAN.R-project.org/package=tidyverse}, + } + + @Manual{twitteR, + title = {twitteR: R Based Twitter Client}, + author = {Jeff Gentry}, + note = {R package version 1.1.9}, + url = {http://lists.hexdump.org/listinfo.cgi/twitter-users-hexdump.org}, + } +@Manual{viridis, + title = {viridis: Default Color Maps from 'matplotlib'}, + author = {Simon Garnier}, + year = {2018}, + note = {R package version 0.5.1}, + url = {https://CRAN.R-project.org/package=viridis}, + } +@Manual{xlsx, + title = {xlsx: Read, write, format Excel 2007 and Excel 97/2000/XP/2003 files}, + author = {Adrian A. Dragulescu}, + year = {2014}, + note = {R package version 0.5.7}, + url = {https://CRAN.R-project.org/package=xlsx}, + } + +@article{zoo, + title = {zoo: S3 Infrastructure for Regular and Irregular Time Series}, + author = {Achim Zeileis and Gabor Grothendieck}, + journal = {Journal of Statistical Software}, + year = {2005}, + volume = {14}, + number = {6}, + pages = {1--27}, + doi = {10.18637/jss.v014.i06}, + }