diff --git a/AmpScan/core.py b/AmpScan/core.py
index cfc74cd296d06b5de8054f10f591d3dd361f3446..754b80cdd14f884a8a3f9c3062a87ce33b78196b 100644
--- a/AmpScan/core.py
+++ b/AmpScan/core.py
@@ -114,13 +114,14 @@ class AmpObject(trimMixin, smoothMixin, analyseMixin,
         self.faces = faces
         self.vert = vert
         self.norm = norm
-        self.values = np.zeros([len(self.vert)])
+        
         # Call function to unify vertices of the array
         if unify is True:
             self.unifyVert()
         # Call function to calculate the edges array
         if struc is True:
             self.calcStruct()
+        self.values = np.zeros([len(self.vert)])
         
     def calcStruct(self, norm=True, edges=True, 
                    edgeFaces=True, faceEdges=True, vNorm=False):
diff --git a/AmpScan/registration.py b/AmpScan/registration.py
index 686e7149afc9a9fb4432b7572a33eb9f69fb8287..895f397541b5e06f07fdd66591862a9a972adfda 100644
--- a/AmpScan/registration.py
+++ b/AmpScan/registration.py
@@ -111,7 +111,7 @@ def registration(baseline, target, method='default', steps=5, direct=True):
             values = np.linalg.norm(regObj.vert - baseline.vert, axis=1)
             return values
 
-    #regObj.values[:] = calcError(baseline, regObj, False)
+    regObj.values[:] = calcError(baseline, regObj, False)
     return regObj
 
         
diff --git a/GUIs/AmpScanGUI.py b/GUIs/AmpScanGUI.py
index 751f456a14cd49b9a7ddbe1083a1af4e6276c9da..96ab7b7f617671c52293ff1b6d1ae7d32353ebce 100644
--- a/GUIs/AmpScanGUI.py
+++ b/GUIs/AmpScanGUI.py
@@ -118,13 +118,32 @@ class AmpScanGUI(QMainWindow):
 #        self.socket.actor.setOpacity(0.5)
     
     def runICP(self):
+        
         static = str(self.alCont.static.currentText())
         moving = str(self.alCont.moving.currentText())
+        self.fileManager.setTable(static, [1,0,0], 0.5, 2)
+        self.fileManager.setTable(moving, [0,0,1], 0.5, 2)
         print('Run the ICP code between %s and %s' % (static, moving))
 
     def runRegistration(self):
+        c1 = [31.0, 73.0, 125.0]
+        c3 = [170.0, 75.0, 65.0]
+        c2 = [212.0, 221.0, 225.0]
+        CMap1 = np.c_[[np.linspace(st, en) for (st, en) in zip(c1, c2)]]
+        CMap2 = np.c_[[np.linspace(st, en) for (st, en) in zip(c2, c3)]]
+        CMap = np.c_[CMap1[:, :-1], CMap2]
+        self.CMapN2P = np.transpose(CMap)/255.0
+        self.CMap02P = np.flip(np.transpose(CMap1)/255.0, axis=0)
         baseline = str(self.regCont.baseline.currentText())
         target = str(self.regCont.target.currentText())
+        self.fileManager.setTable(baseline, [1,0,0], 0.5, 0)
+        self.fileManager.setTable(target, [0,0,1], 0.5, 0)
+        reg = registration(self.files[baseline], self.files[target])
+        reg.addActor(CMap = self.CMapN2P)
+        regName = target + '_reg'
+        self.files[regName] = reg
+        self.fileManager.addRow(regName, self.files[regName])
+        
         print('Run the Registration code between %s and %s' % (baseline, target))
         
     def register(self):
@@ -277,7 +296,14 @@ class fileManager(QMainWindow):
         for r in range(self.table.columnCount() - 1):
             row.append(self.table.item(i, r).text())
         row.append(self.table.item(i, r+1).checkState())
-        return row 
+        return row
+    
+    def setTable(self, name, color = [1.0, 1.0, 1.0], opacity=1.0, display=2):
+        for i in range(self.n):
+            if self.table.item(i, 0).text() == name:
+                self.table.item(i, 2).setText(str(color))
+                self.table.item(i, 3).setText(str(opacity))
+                self.table.item(i, 4).setCheckState(display)
 
 class AlignControls(QMainWindow):
     """