edited & run to html

sizingDemandResponseTrialsNZ_files/kePrint-0.0.1/kePrint.js

+$(document).ready(function(){
+    $('[data-toggle="tooltip"]').tooltip();
+    $('[data-toggle="popover"]').popover();
+});

sizingDemandResponseTrialsNZ_files/navigation-1.1/codefolding.js

+
+window.initializeCodeFolding = function(show) {
+
+  // handlers for show-all and hide all
+  $("#rmd-show-all-code").click(function() {
+    $('div.r-code-collapse').each(function() {
+      $(this).collapse('show');
+    });
+  });
+  $("#rmd-hide-all-code").click(function() {
+    $('div.r-code-collapse').each(function() {
+      $(this).collapse('hide');
+    });
+  });
+
+  // index for unique code element ids
+  var currentIndex = 1;
+
+  // select all R code blocks
+  var rCodeBlocks = $('pre.r, pre.python, pre.bash, pre.sql, pre.cpp, pre.stan');
+  rCodeBlocks.each(function() {
+
+    // create a collapsable div to wrap the code in
+    var div = $('<div class="collapse r-code-collapse"></div>');
+    if (show)
+      div.addClass('in');
+    var id = 'rcode-643E0F36' + currentIndex++;
+    div.attr('id', id);
+    $(this).before(div);
+    $(this).detach().appendTo(div);
+
+    // add a show code button right above
+    var showCodeText = $('<span>' + (show ? 'Hide' : 'Code') + '</span>');
+    var showCodeButton = $('<button type="button" class="btn btn-default btn-xs code-folding-btn pull-right"></button>');
+    showCodeButton.append(showCodeText);
+    showCodeButton
+        .attr('data-toggle', 'collapse')
+        .attr('data-target', '#' + id)
+        .attr('aria-expanded', show)
+        .attr('aria-controls', id);
+
+    var buttonRow = $('<div class="row"></div>');
+    var buttonCol = $('<div class="col-md-12"></div>');
+
+    buttonCol.append(showCodeButton);
+    buttonRow.append(buttonCol);
+
+    div.before(buttonRow);
+
+    // update state of button on show/hide
+    div.on('hidden.bs.collapse', function () {
+      showCodeText.text('Code');
+    });
+    div.on('show.bs.collapse', function () {
+      showCodeText.text('Hide');
+    });
+  });
+
+}

sizingDemandResponseTrialsNZ_files/navigation-1.1/sourceembed.js

+
+window.initializeSourceEmbed = function(filename) {
+  $("#rmd-download-source").click(function() {
+    var src = $("#rmd-source-code").html();
+    var a = document.createElement('a');
+    a.href = "data:text/x-r-markdown;base64," + src;
+    a.download = filename;
+    document.body.appendChild(a);
+    a.click();
+    document.body.removeChild(a);
+  });
+};

sizingDemandResponseTrialsNZ_files/navigation-1.1/tabsets.js

+
+
+/**
+ * jQuery Plugin: Sticky Tabs
+ *
+ * @author Aidan Lister <aidan@php.net>
+ * adapted by Ruben Arslan to activate parent tabs too
+ * http://www.aidanlister.com/2014/03/persisting-the-tab-state-in-bootstrap/
+ */
+(function($) {
+  "use strict";
+  $.fn.rmarkdownStickyTabs = function() {
+    var context = this;
+    // Show the tab corresponding with the hash in the URL, or the first tab
+    var showStuffFromHash = function() {
+      var hash = window.location.hash;
+      var selector = hash ? 'a[href="' + hash + '"]' : 'li.active > a';
+      var $selector = $(selector, context);
+      if($selector.data('toggle') === "tab") {
+        $selector.tab('show');
+        // walk up the ancestors of this element, show any hidden tabs
+        $selector.parents('.section.tabset').each(function(i, elm) {
+          var link = $('a[href="#' + $(elm).attr('id') + '"]');
+          if(link.data('toggle') === "tab") {
+            link.tab("show");
+          }
+        });
+      }
+    };
+
+
+    // Set the correct tab when the page loads
+    showStuffFromHash(context);
+
+    // Set the correct tab when a user uses their back/forward button
+    $(window).on('hashchange', function() {
+      showStuffFromHash(context);
+    });
+
+    // Change the URL when tabs are clicked
+    $('a', context).on('click', function(e) {
+      history.pushState(null, null, this.href);
+      showStuffFromHash(context);
+    });
+
+    return this;
+  };
+}(jQuery));
+
+window.buildTabsets = function(tocID) {
+
+  // build a tabset from a section div with the .tabset class
+  function buildTabset(tabset) {
+
+    // check for fade and pills options
+    var fade = tabset.hasClass("tabset-fade");
+    var pills = tabset.hasClass("tabset-pills");
+    var navClass = pills ? "nav-pills" : "nav-tabs";
+
+    // determine the heading level of the tabset and tabs
+    var match = tabset.attr('class').match(/level(\d) /);
+    if (match === null)
+      return;
+    var tabsetLevel = Number(match[1]);
+    var tabLevel = tabsetLevel + 1;
+
+    // find all subheadings immediately below
+    var tabs = tabset.find("div.section.level" + tabLevel);
+    if (!tabs.length)
+      return;
+
+    // create tablist and tab-content elements
+    var tabList = $('<ul class="nav ' + navClass + '" role="tablist"></ul>');
+    $(tabs[0]).before(tabList);
+    var tabContent = $('<div class="tab-content"></div>');
+    $(tabs[0]).before(tabContent);
+
+    // build the tabset
+    var activeTab = 0;
+    tabs.each(function(i) {
+
+      // get the tab div
+      var tab = $(tabs[i]);
+
+      // get the id then sanitize it for use with bootstrap tabs
+      var id = tab.attr('id');
+
+      // see if this is marked as the active tab
+      if (tab.hasClass('active'))
+        activeTab = i;
+
+      // remove any table of contents entries associated with
+      // this ID (since we'll be removing the heading element)
+      $("div#" + tocID + " li a[href='#" + id + "']").parent().remove();
+
+      // sanitize the id for use with bootstrap tabs
+      id = id.replace(/[.\/?&!#<>]/g, '').replace(/\s/g, '_');
+      tab.attr('id', id);
+
+      // get the heading element within it, grab it's text, then remove it
+      var heading = tab.find('h' + tabLevel + ':first');
+      var headingText = heading.html();
+      heading.remove();
+
+      // build and append the tab list item
+      var a = $('<a role="tab" data-toggle="tab">' + headingText + '</a>');
+      a.attr('href', '#' + id);
+      a.attr('aria-controls', id);
+      var li = $('<li role="presentation"></li>');
+      li.append(a);
+      tabList.append(li);
+
+      // set it's attributes
+      tab.attr('role', 'tabpanel');
+      tab.addClass('tab-pane');
+      tab.addClass('tabbed-pane');
+      if (fade)
+        tab.addClass('fade');
+
+      // move it into the tab content div
+      tab.detach().appendTo(tabContent);
+    });
+
+    // set active tab
+    $(tabList.children('li')[activeTab]).addClass('active');
+    var active = $(tabContent.children('div.section')[activeTab]);
+    active.addClass('active');
+    if (fade)
+      active.addClass('in');
+
+    if (tabset.hasClass("tabset-sticky"))
+      tabset.rmarkdownStickyTabs();
+  }
+
+  // convert section divs with the .tabset class to tabsets
+  var tabsets = $("div.section.tabset");
+  tabsets.each(function(i) {
+    buildTabset($(tabsets[i]));
+  });
+};
+