From c121334a9e8fe75cc64b964c90adf9ed7872afb4 Mon Sep 17 00:00:00 2001 From: Ben Anderson <b.anderson@soton.ac.uk> Date: Wed, 12 Aug 2020 12:39:16 +0100 Subject: [PATCH] info on running R --- howTo/iridis.md | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/howTo/iridis.md b/howTo/iridis.md index 4d353d7..d149e5a 100644 --- a/howTo/iridis.md +++ b/howTo/iridis.md @@ -39,9 +39,11 @@ To do this: ## Now what? -You can interactively run R scripts by running R. Or you can run them non-interactively using the `Rscript <yourScript.R>` command. But you probably shouldn't. +R: https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/R -You should submit your commands (e.g. `Rscript myScript.R`) to the Iridis scheduling system so it can balance everyone's needs. You need to [learn how to do this](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/Job_submission)... +After you've [loaded the R module](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/R), you can interactively run R scripts by running R. Or you can run them non-interactively using the `Rscript <yourScript.R>` command. But you probably shouldn't. + +Instead you should submit your commands (e.g. `Rscript myScript.R`) to the Iridis scheduling system so it can balance everyone's needs. You need to [learn how to do this](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/Job_submission)... ## How to get your code on Iridis @@ -55,6 +57,10 @@ Sadly Iridis cannot see `J:\ or \\soton.ac.uk\resource\` so you you can't follow If you [run out of space](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/User_account_information_and_limits) in your home folder/directory (100 GB max) you can also put it in a scratch folder which will take 1 TB. But this is not backed-up - so data in there is at risk. +## Adding packages + + + ## What you cannot do Run RStudio. Well OK, you can. But it needs the ssh tunneling and XWindow thing mentioned above. Yeahnah. -- GitLab