diff --git a/howTo/iridis.md b/howTo/iridis.md index 197ba3f7d1af4392b9bcbbb2acc2d2e986876663..585540330a18fb86d6d0e0602a835ae2823f8aba 100644 --- a/howTo/iridis.md +++ b/howTo/iridis.md @@ -6,10 +6,10 @@ HPC = [High Performance Computer](https://www.southampton.ac.uk/isolutions/staff We have: - * Iridis 4: https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki + * _Iridis 4: https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki (**retiring February 2022**)_ * Iridis 5: https://hpc.soton.ac.uk/redmine/projects/iridis-5-support/wiki -5 is newer, bigger & better etc etc but new projects start on 4 and, presumably when you prove you need 5, you can transfer. +5 is newer, bigger & better etc etc but new projects start on 4 (_before February 2022_) and, presumably when you prove you need 5, you can transfer. ## How to access Fill in the form on the [iridis page](https://www.southampton.ac.uk/isolutions/staff/iridis.page). @@ -18,30 +18,35 @@ Fill in the form on the [iridis page](https://www.southampton.ac.uk/isolutions/s OK, so you are going to need to [get a bit friendly with unix](https://www.dummies.com/computers/operating-systems/unix/) because the Iridis service runs unix (linux). In general you will be interacting with it using a command line tool like terminal/console etc. Back to the good old days. -You can, possibly, get iridis to [open an Xwindow on your PC](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/Connecting_to_Iridis_4#Using-GUI-programs-through-SSH-connection) but that requires fancy ssh tunneling and stuff. +Assuming you want iridis 5 to start with you can login to any of: -Assuming you want iridis 4 to start with you can login to any of: - - * iridis4_a.soton.ac.uk - * iridis4_b.soton.ac.uk - * iridis4_c.soton.ac.uk + * iridis5_a.soton.ac.uk + * iridis5_b.soton.ac.uk + * iridis5_c.soton.ac.uk To do this: * make sure you are running the UoS vpn * open a terminal/console window on your desktop - * type `ssh YourUsername@iridis4_a.soton.ac.uk` (or which ever you want) & hit return. YourUsername = your UoS username obvs + * type `ssh YourUsername@iridis5_a.soton.ac.uk` (or which ever you want) & hit return. YourUsername = your UoS username obvs * type `yes` to the fingerprint question (DO NOT PANIC!). This should only happen the first time you do this * type your UoS password & hit return * you're in! ## Now what? -R: https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/R +Read these first! + + * https://hpc.soton.ac.uk/redmine/projects/iridis-5-support/wiki/New_User_Warnings <- **especially this one!** + * https://hpc.soton.ac.uk/redmine/projects/iridis-5-support/wiki/Getting_started + +## R + +https://hpc.soton.ac.uk/redmine/projects/iridis-5-support/wiki/R -After you've [loaded the R module](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/R), you can interactively run R scripts by running R. Or you can run them non-interactively using the `Rscript <yourScript.R>` command. But you probably shouldn't. +After you've [loaded the R module](https://hpc.soton.ac.uk/redmine/projects/iridis-5-support/wiki/R), you can interactively run R scripts by running R. Or you can run them non-interactively using the `Rscript <yourScript.R>` command. But you probably shouldn't. -Instead you should submit your commands (e.g. `Rscript myScript.R`) to the Iridis scheduling system so it can balance everyone's needs. You need to [learn how to do this](https://hpc.soton.ac.uk/redmine/projects/iridis-4-support/wiki/Job_submission)... +Instead you should submit your commands (e.g. `Rscript myScript.R`) to the Iridis scheduling system so it can balance everyone's needs. You need to [learn how to do this](https://hpc.soton.ac.uk/redmine/projects/iridis-5-support/wiki/Job_Submission)... ## How to get your code on Iridis